Variant report

Variant	rs9869542
Chromosome Location	chr3:45934588-45934589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:45922108..45924975-chr3:45933515..45935925,2	K562	blood:
2	chr3:45932573..45935155-chr3:45936845..45938513,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2286486	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3764864	0.80[ASN][1000 genomes]
rs3774641	0.80[ASN][1000 genomes]
rs62245096	0.80[ASN][1000 genomes]
rs6441929	0.87[ASN][1000 genomes]
rs6441931	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7627901	0.84[ASN][1000 genomes]
rs7636844	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9836836	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45923400-45948200	Weak transcription	Right Atrium	heart
2	chr3:45925200-45949600	Weak transcription	Pancreas	Pancrea
3	chr3:45925600-45947800	Genic enhancers	Dnd41	blood
4	chr3:45927800-45936400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:45928800-45936600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
6	chr3:45929800-45936600	Enhancers	Primary B cells from cord blood	blood
7	chr3:45929800-45936600	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:45932000-45935800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:45932000-45936200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:45932400-45936200	Weak transcription	Hela-S3	cervix
11	chr3:45932400-45936600	Weak transcription	Fetal Stomach	stomach
12	chr3:45932400-45960200	Weak transcription	Fetal Intestine Small	intestine
13	chr3:45933600-45936000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:45933600-45937800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:45933800-45934600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr3:45933800-45934600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:45933800-45935000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr3:45934000-45935400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:45934000-45936400	Weak transcription	HMEC	breast
20	chr3:45934000-45936800	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:45934000-45960200	Weak transcription	Right Ventricle	heart
22	chr3:45934200-45934600	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr3:45934200-45934600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr3:45934200-45935000	Active TSS	Thymus	Thymus
25	chr3:45934200-45935400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:45934200-45936600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:45934200-45938400	Weak transcription	Aorta	Aorta
28	chr3:45934400-45934600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:45934400-45935200	Weak transcription	GM12878-XiMat	blood
30	chr3:45934400-45935400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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