Variant report

Variant	rs376492732
Chromosome Location	chr6:166720315-166720316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166719852..166722547-chr6:166755922..166758056,2	K562	blood:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886936	chr6:166714024-166731289	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3356004	chr6:166719787-166722335	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv823927	chr6:166719837-166722561	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166718800-166722600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:166719200-166722400	Active TSS	Brain Substantia Nigra	brain
3	chr6:166719400-166720400	Bivalent Enhancer	Adipose Nuclei	Adipose
4	chr6:166719400-166720400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
5	chr6:166719400-166720400	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr6:166719400-166722400	Active TSS	Brain Cingulate Gyrus	brain
7	chr6:166719800-166720600	Enhancers	Liver	Liver
8	chr6:166719800-166720800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
9	chr6:166719800-166722400	Bivalent Enhancer	Fetal Brain Male	brain
10	chr6:166720000-166720600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
11	chr6:166720000-166720600	Bivalent Enhancer	Fetal Brain Female	brain
12	chr6:166720000-166720800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:166720000-166720800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
14	chr6:166720000-166720800	Bivalent Enhancer	Fetal Lung	lung
15	chr6:166720200-166720400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
16	chr6:166720200-166720400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
17	chr6:166720200-166720400	Flanking Active TSS	Gastric	stomach
18	chr6:166720200-166720400	Flanking Bivalent TSS/Enh	HepG2	liver
19	chr6:166720200-166720600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:166720200-166720600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:166720200-166720600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
22	chr6:166720200-166720600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
23	chr6:166720200-166720600	Bivalent Enhancer	Colonic Mucosa	Colon
24	chr6:166720200-166720600	Enhancers	Pancreas	Pancrea
25	chr6:166720200-166720800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
26	chr6:166720200-166720800	Bivalent Enhancer	Lung	lung
27	chr6:166720200-166721000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
28	chr6:166720200-166721000	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:166720200-166722000	Active TSS	GM12878-XiMat	blood
30	chr6:166720200-166722200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
31	chr6:166720200-166722400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links