Variant report

Variant	rs3765041
Chromosome Location	chr11:64127230-64127231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr11:64124546-64127782	Hela-S3	cervix:	n/a	n/a
2	MAX	chr11:64126125-64127487	ECC-1	luminal epithelium:	n/a	chr11:64127233-64127243
3	POLR2A	chr11:64125316-64127393	Hela-S3	cervix:	n/a	n/a
4	POU2F2	chr11:64127040-64127789	GM12878	blood:	n/a	chr11:64127196-64127206 chr11:64127194-64127206 chr11:64127195-64127205 chr11:64127190-64127212 chr11:64127196-64127205 chr11:64127194-64127208 chr11:64127197-64127204 chr11:64127534-64127548 chr11:64127164-64127176 chr11:64127197-64127205 chr11:64127195-64127205 chr11:64127563-64127575
5	POU2F2	chr11:64126984-64127510	GM12891	blood:	n/a	chr11:64127196-64127206 chr11:64127194-64127206 chr11:64127195-64127205 chr11:64127190-64127212 chr11:64127196-64127205 chr11:64127194-64127208 chr11:64127197-64127204 chr11:64127164-64127176 chr11:64127197-64127205 chr11:64127195-64127205
6	POLR2A	chr11:64125026-64127534	K562	blood:	n/a	n/a
7	MAX	chr11:64126288-64127269	Hela-S3	cervix:	n/a	chr11:64127233-64127243
8	MAX	chr11:64126332-64127561	MCF-7	breast:	n/a	chr11:64127233-64127243
9	MAZ	chr11:64125935-64127589	IMR90	lung:	n/a	chr11:64125961-64125977 chr11:64125970-64125977 chr11:64125969-64125978 chr11:64125972-64125988 chr11:64127233-64127243
10	MXI1	chr11:64125646-64127658	SK-N-SH	brain:	n/a	n/a
11	ZBTB7A	chr11:64125127-64127287	K562	blood:	n/a	n/a
12	POLR2A	chr11:64126312-64127448	Raji	blood:	n/a	n/a
13	MAX	chr11:64126373-64127525	ECC-1	luminal epithelium:	n/a	chr11:64127233-64127243
14	CTBP2	chr11:64126325-64127409	H1-hESC	embryonic stem cell:	n/a	n/a
15	ZEB1	chr11:64127158-64128339	GM12878	blood:	n/a	chr11:64127974-64127986
16	POLR2A	chr11:64126124-64127308	HUVEC	blood vessel:	n/a	n/a
17	ZBTB7A	chr11:64125386-64127369	ECC-1	luminal epithelium:	n/a	n/a
18	SIN3A	chr11:64126327-64127387	H1-hESC	embryonic stem cell:	n/a	chr11:64126782-64126795
19	MTA3	chr11:64126109-64128842	GM12878	blood:	n/a	n/a
20	MAX	chr11:64125327-64127627	A549	lung:	n/a	chr11:64125961-64125977 chr11:64125970-64125977 chr11:64125969-64125978 chr11:64125972-64125988 chr11:64127233-64127243 chr11:64125725-64125735
21	MAX	chr11:64126332-64127477	H1-hESC	embryonic stem cell:	n/a	chr11:64127233-64127243
22	SIN3AK20	chr11:64126026-64127677	MCF-7	breast:	n/a	n/a
23	STAT3	chr11:64126818-64127233	MCF10A-Er-Src	breast:	n/a	chr11:64127020-64127032 chr11:64127026-64127037
24	ELF1	chr11:64126089-64128250	GM12878	blood:	n/a	chr11:64126629-64126641 chr11:64126608-64126617 chr11:64126617-64126630 chr11:64126595-64126607 chr11:64126585-64126597
25	ZBTB7A	chr11:64126810-64127316	K562	blood:	n/a	n/a
26	POLR2A	chr11:64125369-64128440	HL-60	blood:	n/a	n/a
27	ZBTB7A	chr11:64125314-64127395	ECC-1	luminal epithelium:	n/a	n/a
28	MXI1	chr11:64127083-64128018	GM12878	blood:	n/a	chr11:64127906-64127915
29	TCF12	chr11:64125900-64127247	A549	lung:	n/a	chr11:64126347-64126355
30	MAX	chr11:64126408-64127292	SK-N-SH	brain:	n/a	chr11:64127233-64127243
31	STAT3	chr11:64126868-64127249	MCF10A-Er-Src	breast:	n/a	chr11:64127020-64127032 chr11:64127026-64127037
32	MXI1	chr11:64126189-64127438	IMR90	lung:	n/a	n/a
33	STAT1	chr11:64126353-64127456	Hela-S3	cervix:	n/a	chr11:64127425-64127437 chr11:64127272-64127284 chr11:64127020-64127032 chr11:64127026-64127037

No.	Distal block	Cell Line	Cell type
1	chr11:64110456..64113002-chr11:64125236..64127679,2	MCF-7	breast:
2	chr11:63972047..63977847-chr11:64122012..64128099,8	K562	blood:
3	chr11:64041009..64043331-chr11:64125161..64128159,2	MCF-7	breast:
4	chr11:64082853..64088243-chr11:64119014..64129028,17	MCF-7	breast:
5	chr11:64008123..64009652-chr11:64126400..64128645,2	MCF-7	breast:
6	chr11:64125330..64128537-chr11:64215213..64218115,3	MCF-7	breast:
7	chr11:64017685..64020898-chr11:64124130..64127721,3	MCF-7	breast:
8	chr11:11862945..11863637-chr11:64126303..64127273,2	Hela-S3	cervix:
9	chr11:64000008..64002901-chr11:64125113..64127418,2	MCF-7	breast:
10	chr11:64070986..64076286-chr11:64124810..64128616,7	K562	blood:
11	chr11:64119430..64124364-chr11:64124831..64128743,7	MCF-7	breast:
12	chr11:64126546..64128128-chr11:64543926..64545937,2	K562	blood:
13	chr11:64013360..64015283-chr11:64125680..64128243,2	MCF-7	breast:
14	chr11:64052659..64056055-chr11:64125689..64127630,3	MCF-7	breast:
15	chr11:64013219..64015249-chr11:64126039..64128658,2	K562	blood:
16	chr11:64008386..64010951-chr11:64125361..64127756,4	MCF-7	breast:
17	chr11:64083913..64086967-chr11:64122125..64127376,8	MCF-7	breast:
18	chr11:64080620..64083894-chr11:64124180..64128334,3	MCF-7	breast:
19	chr11:64108003..64110489-chr11:64126101..64127976,2	MCF-7	breast:

Variant related genes	Relation type
RPS6KA4	TF binding region
ENSG00000173153	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000126432	Chromatin interaction
ENSG00000149781	Chromatin interaction
ENSG00000256940	Chromatin interaction
ENSG00000170242	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000173457	Chromatin interaction
ENSG00000173511	Chromatin interaction
ENSG00000181908	Chromatin interaction
ENSG00000256116	Chromatin interaction
ENSG00000110011	Chromatin interaction
ENSG00000168071	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000149782	Chromatin interaction
ENSG00000173113	Chromatin interaction
ENSG00000173486	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11231761	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
6	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
7	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
8	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
9	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
10	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
12	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
13	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
14	nsv897685	chr11:64048912-64150370	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
15	nsv818841	chr11:64097233-64129722	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
16	nsv897688	chr11:64107735-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
17	nsv897689	chr11:64109118-64148420	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
18	nsv897690	chr11:64118422-64135298	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
19	nsv897691	chr11:64118422-64137875	Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
20	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64125600-64127800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
2	chr11:64125800-64127600	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr11:64125800-64127600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr11:64125800-64127800	Flanking Active TSS	Stomach Smooth Muscle	stomach
5	chr11:64125800-64128000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr11:64125800-64128600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:64125800-64128600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr11:64126000-64127400	Active TSS	Aorta	Aorta
9	chr11:64126000-64127600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:64126000-64127800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr11:64126000-64127800	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr11:64126000-64127800	Flanking Active TSS	Fetal Thymus	thymus
13	chr11:64126000-64128200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr11:64126000-64128400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:64126200-64127400	Active TSS	H9 Cell Line	embryonic stem cell
16	chr11:64126200-64127400	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr11:64126200-64127400	Active TSS	Psoas Muscle	Psoas
18	chr11:64126200-64127400	Active TSS	Rectal Smooth Muscle	rectum
19	chr11:64126200-64128000	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr11:64126200-64128000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:64126200-64128000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr11:64126200-64128000	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr11:64126200-64128000	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr11:64126400-64127600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:64126400-64127600	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr11:64126400-64128000	Active TSS	Brain Angular Gyrus	brain
27	chr11:64126600-64127400	Active TSS	Fetal Kidney	kidney
28	chr11:64126600-64127400	Transcr. at gene 5' and 3'	Right Atrium	heart
29	chr11:64126800-64127400	Flanking Active TSS	Liver	Liver
30	chr11:64126800-64127400	Flanking Active TSS	HepG2	liver
31	chr11:64126800-64127400	Flanking Active TSS	K562	blood
32	chr11:64126800-64127600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:64126800-64127600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:64126800-64127600	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr11:64126800-64127600	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr11:64126800-64127600	Flanking Active TSS	Fetal Brain Male	brain
37	chr11:64126800-64127600	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr11:64126800-64127600	Flanking Active TSS	Placenta	Placenta
39	chr11:64126800-64127600	Flanking Active TSS	Fetal Stomach	stomach
40	chr11:64126800-64127600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr11:64126800-64127800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr11:64126800-64127800	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr11:64126800-64127800	Flanking Active TSS	Pancreas	Pancrea
44	chr11:64126800-64127800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr11:64126800-64127800	Flanking Active TSS	Dnd41	blood
46	chr11:64126800-64128000	Flanking Active TSS	Primary B cells from peripheral blood	blood
47	chr11:64126800-64128000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:64126800-64128000	Flanking Active TSS	Colonic Mucosa	Colon
49	chr11:64126800-64128000	Flanking Active TSS	Fetal Intestine Large	intestine
50	chr11:64126800-64128000	Flanking Active TSS	Fetal Muscle Leg	muscle

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