Variant report

Variant	rs376669109
Chromosome Location	chr3:145910640-145910641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145883004..145884526-chr3:145908906..145911614,2	MCF-7	breast:

No.	miRNA target gene	miRNA name	Chromosome Location
1	PLSCR4	hsa-miR-16-5p	chr3:145910623-145910644
2	PLSCR4	hsa-miR-103a-3p	chr3:145910624-145910647
3	PLSCR4	hsa-miR-15b-5p	chr3:145910623-145910644

Variant related genes	Relation type
PLSCR4	miRNA target site

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1011146	chr3:145859022-145911429	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv3425123	chr3:145908612-145910910	Strong transcription Weak transcription Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
7	esv3399707	chr3:145908687-145911235	Weak transcription Strong transcription Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	n/a
8	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145880800-145914400	Weak transcription	Left Ventricle	heart
2	chr3:145883000-145913000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:145884800-145910800	Weak transcription	Liver	Liver
4	chr3:145895800-145918200	Weak transcription	NHDF-Ad	bronchial
5	chr3:145896400-145910800	Weak transcription	Fetal Lung	lung
6	chr3:145896600-145911200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:145897000-145933600	Weak transcription	Fetal Stomach	stomach
8	chr3:145899600-145917400	Weak transcription	Pancreas	Pancrea
9	chr3:145901000-145923800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:145902000-145912000	Weak transcription	Fetal Intestine Large	intestine
11	chr3:145902800-145912400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:145902800-145923000	Weak transcription	Osteobl	bone
13	chr3:145902800-145923600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:145903000-145934800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:145903800-145911800	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:145904000-145911800	Weak transcription	Fetal Heart	heart
17	chr3:145904800-145912600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:145905000-145933600	Weak transcription	NHLF	lung
19	chr3:145906400-145914600	Weak transcription	Fetal Brain Male	brain
20	chr3:145907000-145938600	Weak transcription	Fetal Intestine Small	intestine
21	chr3:145907400-145910800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:145907400-145912000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:145907400-145913000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr3:145907400-145914400	Weak transcription	Psoas Muscle	Psoas
25	chr3:145907400-145918200	Weak transcription	HepG2	liver
26	chr3:145907600-145913200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:145907600-145915000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:145907600-145939200	Weak transcription	Brain Anterior Caudate	brain
29	chr3:145907800-145911400	Weak transcription	Fetal Kidney	kidney
30	chr3:145908200-145910800	Weak transcription	Adipose Nuclei	Adipose
31	chr3:145908200-145936400	Weak transcription	A549	lung
32	chr3:145908400-145917400	Weak transcription	Ovary	ovary
33	chr3:145908600-145914400	Weak transcription	Aorta	Aorta
34	chr3:145908800-145911400	Weak transcription	HUVEC	blood vessel
35	chr3:145909200-145910800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:145909200-145911800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:145909400-145912600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:145909600-145939200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:145909800-145912000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr3:145910400-145932400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:145910400-145940000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr3:145910600-145913000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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