Variant report

Variant	rs3767036
Chromosome Location	chr1:77984923-77984924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12567785	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12568528	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs59556669	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61168031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77980800-77999400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:77981800-77987200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:77981800-77987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:77981800-77987400	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:77981800-77998400	Weak transcription	Osteobl	bone
6	chr1:77981800-77999200	Weak transcription	NHLF	lung
7	chr1:77981800-77999400	Weak transcription	HSMMtube	muscle
8	chr1:77982000-77998200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:77982000-77998200	Weak transcription	Brain Angular Gyrus	brain
10	chr1:77982200-77998200	Weak transcription	Brain Anterior Caudate	brain
11	chr1:77982400-77987200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:77982600-77986000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:77982800-77986200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:77983000-77985000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
15	chr1:77983000-77987200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:77983000-78009200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:77983800-77985200	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr1:77984000-77985400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:77984200-77985000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr1:77984600-77985400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:77984600-77986000	Weak transcription	HSMM	muscle
22	chr1:77984600-77991200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:77984600-77996400	Strong transcription	NHDF-Ad	bronchial
24	chr1:77984800-77985200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr1:77984800-77986600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr1:77984800-77987800	Weak transcription	Primary T cells from cord blood	blood
27	chr1:77984800-77988000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:77984800-77988600	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr1:77984800-77991600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr1:77984800-77991600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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