Variant report

Variant	rs59556669
Chromosome Location	chr1:77964282-77964283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77963812..77966662-chr1:77976245..77978998,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12046197	0.87[AMR][1000 genomes]
rs12048207	0.87[AMR][1000 genomes]
rs12567785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12568528	1.00[ASN][1000 genomes]
rs28776274	0.87[AMR][1000 genomes]
rs28878211	0.87[AMR][1000 genomes]
rs3767036	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61168031	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77913200-77968400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:77955800-77964400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:77956000-77964600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:77956200-77964400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:77956200-77975600	Weak transcription	HSMMtube	muscle
6	chr1:77958200-77974800	Weak transcription	Brain Angular Gyrus	brain
7	chr1:77958400-77974600	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:77958600-77965000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:77958800-77974600	Weak transcription	Brain Anterior Caudate	brain
10	chr1:77958800-77974600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:77960000-77968000	Weak transcription	HSMM	muscle
12	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:77962000-77970200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr1:77962400-77964400	Weak transcription	Primary T cells from cord blood	blood
16	chr1:77963400-77965000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:77963800-77974200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:77964000-77965800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:77964000-77974600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:77964200-77964400	Enhancers	NHLF	lung
21	chr1:77964200-77965200	Genic enhancers	NHDF-Ad	bronchial
22	chr1:77964200-77965400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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