Variant report

Variant	rs3769242
Chromosome Location	chr2:173843203-173843204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173818940..173821584-chr2:173840789..173843259,2	K562	blood:
2	chr2:173842376..173845001-chr2:173860642..173863497,2	MCF-7	breast:
3	chr2:173840982..173843855-chr2:173843865..173846524,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10497390	0.85[AFR][1000 genomes]
rs11884510	0.86[AFR][1000 genomes]
rs11890301	0.86[AFR][1000 genomes]
rs11895261	0.86[AFR][1000 genomes]
rs16861119	0.86[AFR][1000 genomes]
rs16861121	0.86[AFR][1000 genomes]
rs16861122	0.86[AFR][1000 genomes]
rs1986155	0.81[AFR][1000 genomes]
rs41414646	0.86[AFR][1000 genomes]
rs41473447	0.83[AFR][1000 genomes]
rs41514546	0.85[AFR][1000 genomes]
rs4989335	0.86[AFR][1000 genomes]
rs4989336	0.86[AFR][1000 genomes]
rs55667313	0.86[AFR][1000 genomes]
rs56041203	0.85[AFR][1000 genomes]
rs56281308	0.85[AFR][1000 genomes]
rs56333621	0.81[AFR][1000 genomes]
rs57619371	0.85[AFR][1000 genomes]
rs58097901	0.82[AFR][1000 genomes]
rs58634128	0.86[AFR][1000 genomes]
rs59492040	0.86[AFR][1000 genomes]
rs60761259	0.86[AFR][1000 genomes]
rs61542186	0.86[AFR][1000 genomes]
rs61688627	0.85[AFR][1000 genomes]
rs6705188	0.86[AFR][1000 genomes]
rs6707251	0.85[AFR][1000 genomes]
rs6707359	0.85[AFR][1000 genomes]
rs6719635	0.86[AFR][1000 genomes]
rs6722709	0.86[AFR][1000 genomes]
rs6727383	0.86[AFR][1000 genomes]
rs6738094	0.86[AFR][1000 genomes]
rs6738441	0.86[AFR][1000 genomes]
rs73977748	0.85[AFR][1000 genomes]
rs73977749	0.85[AFR][1000 genomes]
rs73977751	0.86[AFR][1000 genomes]
rs73977753	0.86[AFR][1000 genomes]
rs73977754	0.86[AFR][1000 genomes]
rs73977755	0.86[AFR][1000 genomes]
rs73977757	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173832200-173850000	Weak transcription	Brain Anterior Caudate	brain
2	chr2:173832600-173850200	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:173833800-173845000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:173833800-173855600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:173833800-173859000	Weak transcription	Fetal Intestine Small	intestine
6	chr2:173833800-173860800	Weak transcription	Right Ventricle	heart
7	chr2:173834200-173855800	Weak transcription	Brain Angular Gyrus	brain
8	chr2:173835800-173886800	Weak transcription	Lung	lung
9	chr2:173837600-173843600	Weak transcription	Liver	Liver
10	chr2:173840400-173843600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:173840600-173843400	Enhancers	Thymus	Thymus
12	chr2:173840800-173843400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:173840800-173843400	Enhancers	Fetal Thymus	thymus
14	chr2:173841200-173843600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr2:173841800-173843400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:173841800-173843800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:173842000-173844400	Enhancers	A549	lung
18	chr2:173842200-173843400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:173842200-173843400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:173842400-173850800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:173842600-173850000	Weak transcription	Fetal Heart	heart
22	chr2:173842800-173843400	Enhancers	Primary hematopoietic stem cells	blood
23	chr2:173842800-173843400	Enhancers	Fetal Muscle Trunk	muscle
24	chr2:173842800-173855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:173843200-173848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr2:173843200-173849000	Weak transcription	Fetal Stomach	stomach
27	chr2:173843200-173850000	Weak transcription	Left Ventricle	heart
28	chr2:173843200-173850000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr2:173843200-173861400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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