Variant report

Variant	rs1986155
Chromosome Location	chr2:173854187-173854188
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173828716..173831114-chr2:173852684..173854966,2	K562	blood:
2	chr2:173853861..173856842-chr2:173857808..173860672,3	MCF-7	breast:
3	chr2:173844924..173850688-chr2:173851282..173855756,6	K562	blood:
4	chr2:173850524..173852909-chr2:173853825..173856891,3	MCF-7	breast:
5	chr2:173844919..173847771-chr2:173851591..173855437,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091428	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10497390	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11884510	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11890301	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11895261	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11897801	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16861119	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16861121	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16861122	0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16861133	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16861161	1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2044516	1.00[CEU][hapmap]
rs2468389	1.00[CEU][hapmap]
rs2676499	1.00[CEU][hapmap]
rs3769242	0.81[AFR][1000 genomes]
rs41414646	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs41473447	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs41514546	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4989335	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4989336	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs55667313	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56041203	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56281308	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56333621	0.90[AFR][1000 genomes]
rs57619371	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58097901	0.88[AFR][1000 genomes]
rs58634128	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs59492040	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60761259	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61542186	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61688627	0.91[AFR][1000 genomes]
rs6705188	0.85[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6707251	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6707359	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6713228	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6719635	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6722709	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6727383	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6734119	1.00[CEU][hapmap]
rs6738094	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6738441	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73977748	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73977749	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73977751	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73977753	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73977754	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73977755	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73977757	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs938668	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173833800-173855600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:173833800-173859000	Weak transcription	Fetal Intestine Small	intestine
3	chr2:173833800-173860800	Weak transcription	Right Ventricle	heart
4	chr2:173834200-173855800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:173835800-173886800	Weak transcription	Lung	lung
6	chr2:173842800-173855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:173843200-173861400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:173843400-173858200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:173848800-173854400	Weak transcription	Ovary	ovary
10	chr2:173849800-173861200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:173850400-173855400	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:173850400-173855800	Weak transcription	Fetal Stomach	stomach
13	chr2:173850400-173864600	Weak transcription	Psoas Muscle	Psoas
14	chr2:173850600-173855600	Weak transcription	Fetal Brain Male	brain
15	chr2:173850600-173855600	Weak transcription	Left Ventricle	heart
16	chr2:173850600-173855800	Weak transcription	Brain Anterior Caudate	brain
17	chr2:173851000-173855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:173851000-173855400	Weak transcription	Adipose Nuclei	Adipose
19	chr2:173851000-173859000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr2:173851000-173860400	Weak transcription	Fetal Heart	heart
21	chr2:173851000-173861000	Weak transcription	Fetal Kidney	kidney
22	chr2:173851200-173855200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr2:173851200-173855200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:173851200-173855200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr2:173851200-173855200	Weak transcription	A549	lung
26	chr2:173851200-173859600	Weak transcription	NHDF-Ad	bronchial
27	chr2:173851200-173860200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:173851200-173860200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:173852400-173868000	Weak transcription	Gastric	stomach
30	chr2:173853000-173857400	Strong transcription	Liver	Liver
31	chr2:173853200-173854200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:173853200-173854400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr2:173853200-173856200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr2:173853400-173856200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:173853800-173856400	Enhancers	Fetal Lung	lung

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