Variant report

Variant	rs6713228
Chromosome Location	chr2:173881684-173881685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173874368..173876154-chr2:173879037..173881952,2	MCF-7	breast:
2	chr2:173873426..173877615-chr2:173879611..173885929,8	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10497390	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11884510	1.00[EUR][1000 genomes]
rs11890301	1.00[EUR][1000 genomes]
rs11895261	1.00[EUR][1000 genomes]
rs11897801	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs16861119	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16861121	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16861122	1.00[EUR][1000 genomes]
rs16861133	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16861161	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1986155	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2044516	1.00[CEU][hapmap]
rs2468389	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2676499	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs41414646	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs41473447	1.00[EUR][1000 genomes]
rs41514546	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4989335	1.00[EUR][1000 genomes]
rs4989336	1.00[EUR][1000 genomes]
rs55667313	1.00[EUR][1000 genomes]
rs55815300	0.94[EUR][1000 genomes]
rs56041203	1.00[EUR][1000 genomes]
rs56281308	1.00[EUR][1000 genomes]
rs56333621	0.94[EUR][1000 genomes]
rs57619371	1.00[EUR][1000 genomes]
rs58097901	0.94[EUR][1000 genomes]
rs58634128	1.00[EUR][1000 genomes]
rs59492040	1.00[EUR][1000 genomes]
rs60761259	1.00[EUR][1000 genomes]
rs61542186	1.00[EUR][1000 genomes]
rs61688627	0.94[EUR][1000 genomes]
rs6705188	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs6707251	1.00[EUR][1000 genomes]
rs6707359	1.00[EUR][1000 genomes]
rs6719635	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6722709	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6727383	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6734119	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6738094	1.00[EUR][1000 genomes]
rs6738441	1.00[EUR][1000 genomes]
rs73977748	1.00[EUR][1000 genomes]
rs73977749	1.00[EUR][1000 genomes]
rs73977751	1.00[EUR][1000 genomes]
rs73977753	1.00[EUR][1000 genomes]
rs73977754	1.00[EUR][1000 genomes]
rs73977755	1.00[EUR][1000 genomes]
rs73977757	1.00[EUR][1000 genomes]
rs938668	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173835800-173886800	Weak transcription	Lung	lung
2	chr2:173856000-173885200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:173856200-173882400	Weak transcription	Left Ventricle	heart
4	chr2:173856200-173892600	Weak transcription	Brain Angular Gyrus	brain
5	chr2:173861000-173888000	Weak transcription	Fetal Stomach	stomach
6	chr2:173862200-173881800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:173862200-173883600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:173868000-173902000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:173868600-173892200	Weak transcription	Fetal Intestine Large	intestine
10	chr2:173871000-173884400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:173871000-173886000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:173877200-173901600	Weak transcription	Gastric	stomach
13	chr2:173877800-173887800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:173878200-173886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:173879000-173882400	Weak transcription	Right Atrium	heart
16	chr2:173879200-173882800	Weak transcription	Adipose Nuclei	Adipose
17	chr2:173879400-173888600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:173880600-173882400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:173880800-173891600	Strong transcription	Liver	Liver
20	chr2:173881000-173881800	Enhancers	Fetal Heart	heart
21	chr2:173881200-173892400	Weak transcription	Fetal Intestine Small	intestine
22	chr2:173881200-173912800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:173881400-173887200	Weak transcription	Esophagus	oesophagus
24	chr2:173881400-173897200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr2:173881600-173882800	Weak transcription	Ovary	ovary

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