Variant report

Variant	rs377024365
Chromosome Location	chr6:151098088-151098089
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3372927	chr6:151095559-151100857	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3436812	chr6:151096559-151099857	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3405464	chr6:151096909-151099607	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv2086893	chr6:151097374-151098700	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv3405762	chr6:151097375-151098380	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
2	chr6:151086000-151121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:151087600-151109200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:151088200-151121400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:151089000-151105200	Weak transcription	Left Ventricle	heart
6	chr6:151089000-151109800	Weak transcription	Fetal Brain Male	brain
7	chr6:151091000-151125800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:151091400-151099000	Weak transcription	Placenta	Placenta
9	chr6:151093000-151100400	Strong transcription	Primary B cells from cord blood	blood
10	chr6:151093000-151109400	Weak transcription	Fetal Heart	heart
11	chr6:151094200-151105400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:151094800-151098800	Weak transcription	Fetal Stomach	stomach
13	chr6:151096000-151100600	Strong transcription	Fetal Thymus	thymus
14	chr6:151096800-151100800	Strong transcription	Thymus	Thymus
15	chr6:151097200-151099000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:151097200-151105200	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:151097400-151098800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr6:151097400-151098800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:151097400-151099400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:151097400-151100600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:151097400-151101600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:151097400-151108400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:151097400-151108400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:151097400-151109200	Weak transcription	Fetal Brain Female	brain
25	chr6:151097400-151109600	Weak transcription	Brain Substantia Nigra	brain
26	chr6:151097600-151098800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:151097600-151102200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:151097600-151103000	Weak transcription	Brain Anterior Caudate	brain
29	chr6:151097600-151134800	Weak transcription	HUVEC	blood vessel
30	chr6:151097800-151098400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:151097800-151099200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:151097800-151099200	ZNF genes & repeats	Lung	lung
33	chr6:151098000-151098200	ZNF genes & repeats	Adipose Nuclei	Adipose
34	chr6:151098000-151098200	ZNF genes & repeats	Liver	Liver
35	chr6:151098000-151098400	ZNF genes & repeats	Esophagus	oesophagus
36	chr6:151098000-151098400	Strong transcription	Fetal Kidney	kidney
37	chr6:151098000-151098400	Genic enhancers	Spleen	Spleen
38	chr6:151098000-151098800	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:151098000-151099000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:151098000-151099200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:151098000-151099200	ZNF genes & repeats	Aorta	Aorta
42	chr6:151098000-151100800	Strong transcription	Primary B cells from peripheral blood	blood

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