Variant report

Variant	rs3770865
Chromosome Location	chr2:36690109-36690110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28622501	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3770858	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770866	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3770872	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4670560	0.92[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6720730	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756203	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs848534	0.90[CEU][hapmap]
rs848544	0.90[CEU][hapmap]
rs848549	0.85[CEU][hapmap]
rs848558	0.90[CEU][hapmap]
rs861051	0.85[CEU][hapmap]
rs940294	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs940295	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv581468	chr2:36687111-36715689	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:36679800-36704000	Weak transcription	Fetal Brain Female	brain
4	chr2:36680400-36695600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:36683400-36691400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:36683800-36690800	Genic enhancers	Osteobl	bone
7	chr2:36683800-36704000	Weak transcription	Pancreas	Pancrea
8	chr2:36684000-36695800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:36684200-36695800	Weak transcription	Brain Substantia Nigra	brain
10	chr2:36684400-36691800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:36684800-36691800	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:36684800-36694000	Weak transcription	Fetal Brain Male	brain
13	chr2:36684800-36695800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr2:36685000-36691600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr2:36685600-36690400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:36686600-36690200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:36686600-36690400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr2:36686600-36691200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr2:36686600-36691400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr2:36687000-36690600	Weak transcription	Fetal Stomach	stomach
21	chr2:36687200-36690200	Weak transcription	Left Ventricle	heart
22	chr2:36687200-36690600	Weak transcription	Esophagus	oesophagus
23	chr2:36687200-36690600	Weak transcription	Lung	lung
24	chr2:36687200-36693600	Weak transcription	Right Ventricle	heart
25	chr2:36687200-36695800	Weak transcription	Right Atrium	heart
26	chr2:36687200-36704000	Weak transcription	Gastric	stomach
27	chr2:36687200-36712000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:36687400-36691200	Weak transcription	Colon Smooth Muscle	Colon
29	chr2:36687600-36690200	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr2:36688000-36690200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr2:36688000-36690200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr2:36688000-36692400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:36688200-36690200	Enhancers	Stomach Mucosa	stomach
34	chr2:36688400-36690400	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr2:36688400-36690600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:36688400-36691000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr2:36688400-36691400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr2:36688400-36692000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr2:36688400-36701600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr2:36688400-36704200	Weak transcription	Spleen	Spleen
41	chr2:36688400-36704400	Weak transcription	Colonic Mucosa	Colon
42	chr2:36688600-36690800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr2:36688600-36690800	Weak transcription	Aorta	Aorta
44	chr2:36688600-36691200	Weak transcription	Ovary	ovary
45	chr2:36688600-36691600	Weak transcription	Psoas Muscle	Psoas
46	chr2:36688600-36691600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr2:36688600-36692000	Weak transcription	Fetal Heart	heart
48	chr2:36688600-36695800	Weak transcription	Brain Anterior Caudate	brain
49	chr2:36688600-36695800	Weak transcription	Brain Hippocampus Middle	brain
50	chr2:36688600-36704000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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