Variant report

Variant	rs848534
Chromosome Location	chr2:36690242-36690243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs3770858	0.90[CEU][hapmap]
rs3770865	0.90[CEU][hapmap]
rs3770866	0.90[CEU][hapmap]
rs3770872	0.90[CEU][hapmap]
rs4670560	0.85[CEU][hapmap]
rs6720730	0.88[CEU][hapmap]
rs711251	0.82[JPT][hapmap]
rs756203	0.90[CEU][hapmap]
rs848544	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs848545	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs848546	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs848548	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs848549	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs848555	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs848558	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs861051	0.95[CEU][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs940294	0.90[CEU][hapmap]
rs940295	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv581468	chr2:36687111-36715689	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:36679800-36704000	Weak transcription	Fetal Brain Female	brain
3	chr2:36680400-36695600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:36683400-36691400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr2:36683800-36690800	Genic enhancers	Osteobl	bone
6	chr2:36683800-36704000	Weak transcription	Pancreas	Pancrea
7	chr2:36684000-36695800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:36684200-36695800	Weak transcription	Brain Substantia Nigra	brain
9	chr2:36684400-36691800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:36684800-36691800	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:36684800-36694000	Weak transcription	Fetal Brain Male	brain
12	chr2:36684800-36695800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr2:36685000-36691600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr2:36685600-36690400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:36686600-36690400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr2:36686600-36691200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr2:36686600-36691400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr2:36687000-36690600	Weak transcription	Fetal Stomach	stomach
19	chr2:36687200-36690600	Weak transcription	Esophagus	oesophagus
20	chr2:36687200-36690600	Weak transcription	Lung	lung
21	chr2:36687200-36693600	Weak transcription	Right Ventricle	heart
22	chr2:36687200-36695800	Weak transcription	Right Atrium	heart
23	chr2:36687200-36704000	Weak transcription	Gastric	stomach
24	chr2:36687200-36712000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:36687400-36691200	Weak transcription	Colon Smooth Muscle	Colon
26	chr2:36688000-36692400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:36688400-36690400	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr2:36688400-36690600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:36688400-36691000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr2:36688400-36691400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr2:36688400-36692000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:36688400-36701600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr2:36688400-36704200	Weak transcription	Spleen	Spleen
34	chr2:36688400-36704400	Weak transcription	Colonic Mucosa	Colon
35	chr2:36688600-36690800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr2:36688600-36690800	Weak transcription	Aorta	Aorta
37	chr2:36688600-36691200	Weak transcription	Ovary	ovary
38	chr2:36688600-36691600	Weak transcription	Psoas Muscle	Psoas
39	chr2:36688600-36691600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr2:36688600-36692000	Weak transcription	Fetal Heart	heart
41	chr2:36688600-36695800	Weak transcription	Brain Anterior Caudate	brain
42	chr2:36688600-36695800	Weak transcription	Brain Hippocampus Middle	brain
43	chr2:36688600-36704000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:36688600-36725600	Weak transcription	Small Intestine	intestine
45	chr2:36688800-36690800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr2:36688800-36691000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr2:36688800-36691600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:36688800-36691800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr2:36689000-36690400	Enhancers	Fetal Lung	lung
50	chr2:36689000-36690600	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links