Variant report

Variant	rs3771985
Chromosome Location	chr2:7144408-7144409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7142289..7146091-chr2:7146579..7150616,5	K562	blood:
2	chr2:7142289..7144797-chr2:7147566..7149207,2	K562	blood:
3	chr2:7143200..7144893-chr2:7148159..7150235,2	MCF-7	breast:
4	chr2:6932799..6935724-chr2:7143556..7146298,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12468736	0.83[EUR][1000 genomes]
rs12476611	0.83[EUR][1000 genomes]
rs13399156	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13414682	0.95[ASN][1000 genomes]
rs35431985	0.83[EUR][1000 genomes]
rs3755507	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771970	0.83[EUR][1000 genomes]
rs3771990	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6720046	0.83[EUR][1000 genomes]
rs771260	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs771261	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs771269	0.81[ASN][1000 genomes]
rs771270	0.88[ASN][1000 genomes]
rs896788	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7101200-7154000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:7115800-7148800	Weak transcription	Esophagus	oesophagus
3	chr2:7121200-7145400	Weak transcription	Thymus	Thymus
4	chr2:7121400-7148200	Weak transcription	Fetal Intestine Small	intestine
5	chr2:7124000-7157600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:7126600-7147600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:7126800-7148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr2:7127200-7154000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr2:7131200-7146800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:7131400-7150200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:7131600-7154200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:7131600-7154200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr2:7132800-7146600	Weak transcription	Fetal Heart	heart
16	chr2:7133400-7147400	Weak transcription	Fetal Kidney	kidney
17	chr2:7133800-7147400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr2:7133800-7147600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr2:7133800-7147800	Weak transcription	Fetal Brain Female	brain
20	chr2:7133800-7150800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:7134400-7147400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:7135000-7146800	Weak transcription	Lung	lung
23	chr2:7135200-7145400	Weak transcription	Fetal Brain Male	brain
24	chr2:7135400-7145000	Weak transcription	Brain Germinal Matrix	brain
25	chr2:7135800-7146800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:7137200-7146200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:7137200-7149800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:7137400-7160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr2:7138000-7147000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:7138600-7147600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr2:7139200-7146600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr2:7139400-7147000	Weak transcription	Fetal Lung	lung
33	chr2:7139600-7146200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr2:7139600-7147000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr2:7139600-7149800	Weak transcription	Ovary	ovary
36	chr2:7139800-7147000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:7140200-7146400	Weak transcription	Left Ventricle	heart
38	chr2:7140200-7146600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:7140400-7145000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr2:7140400-7145200	Weak transcription	Brain Angular Gyrus	brain
41	chr2:7140400-7146800	Weak transcription	Fetal Muscle Leg	muscle
42	chr2:7140400-7147400	Weak transcription	GM12878-XiMat	blood
43	chr2:7140600-7146800	Weak transcription	Pancreas	Pancrea
44	chr2:7140800-7145400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr2:7140800-7146800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr2:7141600-7145600	Strong transcription	Dnd41	blood
47	chr2:7141800-7151200	Strong transcription	Primary T cells from cord blood	blood
48	chr2:7142400-7144600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:7142600-7145200	Weak transcription	Brain Anterior Caudate	brain
50	chr2:7142600-7163000	Weak transcription	Small Intestine	intestine

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