The 2.0 version of rSNPBase

Variant report

Variant rs3771970
Chromosome Location chr2:7153624-7153625
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:7101200-7154000 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr2:7124000-7157600 Weak transcription Placenta Amnion Placenta Amnion
3 chr2:7127200-7154000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr2:7131000-7167600 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr2:7131400-7162400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr2:7131600-7154200 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr2:7131600-7154200 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr2:7137400-7160200 Weak transcription Primary T regulatory cells fromperipheralblood blood
9 chr2:7142600-7163000 Weak transcription Small Intestine intestine
10 chr2:7144200-7154600 Weak transcription HepG2 liver
11 chr2:7145200-7156200 Enhancers Brain Angular Gyrus brain
12 chr2:7146800-7156000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
13 chr2:7147000-7154800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
14 chr2:7147200-7158600 Enhancers Colon Smooth Muscle Colon
15 chr2:7147400-7154000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr2:7147400-7156000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr2:7147400-7157000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr2:7147400-7159200 Weak transcription Thymus Thymus
19 chr2:7147600-7155600 Enhancers NHDF-Ad bronchial
20 chr2:7148000-7153800 Weak transcription Fetal Kidney kidney
21 chr2:7148000-7154000 Weak transcription Primary T cells fromperipheralblood blood
22 chr2:7148000-7155800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr2:7148200-7154000 Weak transcription Primary T helper cells PMA-I stimulated --
24 chr2:7148200-7154000 Weak transcription Fetal Brain Male brain
25 chr2:7148200-7156000 Enhancers Brain Inferior Temporal Lobe brain
26 chr2:7148200-7159400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr2:7148200-7172600 Weak transcription H9 Cell Line embryonic stem cell
28 chr2:7148600-7154400 Weak transcription Primary B cells from cord blood blood
29 chr2:7148800-7154000 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr2:7148800-7154200 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr2:7148800-7154200 Weak transcription GM12878-XiMat blood
32 chr2:7148800-7154600 Weak transcription Fetal Brain Female brain
33 chr2:7148800-7155400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr2:7148800-7156400 Enhancers Brain Hippocampus Middle brain
35 chr2:7148800-7158000 Weak transcription Brain Germinal Matrix brain
36 chr2:7148800-7159200 Enhancers Brain Substantia Nigra brain
37 chr2:7148800-7160200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr2:7148800-7160800 Enhancers Fetal Heart heart
39 chr2:7148800-7171400 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr2:7149000-7157800 Enhancers Brain Anterior Caudate brain
41 chr2:7149200-7154000 Weak transcription Primary hematopoietic stem cells blood
42 chr2:7149200-7154400 Weak transcription K562 blood
43 chr2:7149200-7154600 Weak transcription Primary monocytes fromperipheralblood blood
44 chr2:7149200-7158200 Weak transcription Fetal Intestine Small intestine
45 chr2:7149200-7159200 Enhancers Brain Cingulate Gyrus brain
46 chr2:7149200-7159400 Weak transcription Placenta Placenta
47 chr2:7149200-7160000 Weak transcription Esophagus oesophagus
48 chr2:7149200-7160400 Weak transcription Lung lung
49 chr2:7149200-7163800 Weak transcription Gastric stomach
50 chr2:7149400-7157000 Weak transcription Colonic Mucosa Colon

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Last update: Aug 31, 2015