Variant report

Variant	rs3771962
Chromosome Location	chr2:7159613-7159614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7158155..7161194-chr2:7163664..7167209,3	K562	blood:
2	chr2:7148867..7150372-chr2:7158852..7161810,2	MCF-7	breast:
3	chr2:7158554..7160902-chr2:7167034..7169770,2	MCF-7	breast:
4	chr2:7056245..7058091-chr2:7157443..7160090,2	MCF-7	breast:
5	chr2:7158767..7160822-chr2:7170212..7171959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151692	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1023850	0.99[ASN][1000 genomes]
rs1023851	0.83[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1023852	0.83[CEU][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12468736	0.91[ASN][1000 genomes]
rs12476605	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12476611	0.91[ASN][1000 genomes]
rs12476778	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12477577	0.81[CEU][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13034571	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16865853	0.81[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16865867	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280337	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280338	0.81[CEU][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34060256	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34349013	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34719558	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35431985	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3732330	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3755499	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3755503	0.89[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771955	0.81[CEU][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3771964	0.81[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3771970	0.92[ASN][1000 genomes]
rs59522788	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62105654	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6707249	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6720046	0.92[ASN][1000 genomes]
rs6722170	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs771254	0.81[CEU][hapmap]
rs771269	0.83[CEU][hapmap]
rs771270	0.83[CEU][hapmap]
rs921620	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs921621	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9917219	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs996508	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:7137400-7160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:7142600-7163000	Weak transcription	Small Intestine	intestine
5	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:7148800-7160200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:7148800-7160800	Enhancers	Fetal Heart	heart
8	chr2:7148800-7171400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr2:7149200-7160000	Weak transcription	Esophagus	oesophagus
10	chr2:7149200-7160400	Weak transcription	Lung	lung
11	chr2:7149200-7163800	Weak transcription	Gastric	stomach
12	chr2:7150600-7162400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:7151000-7159800	Weak transcription	Fetal Thymus	thymus
14	chr2:7151000-7164600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr2:7151200-7160200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:7153000-7162200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:7154000-7183200	Strong transcription	Primary T cells from cord blood	blood
20	chr2:7154000-7190200	Strong transcription	Dnd41	blood
21	chr2:7154200-7160400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:7154600-7161000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr2:7154600-7163200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr2:7154600-7174800	Weak transcription	Primary B cells from cord blood	blood
25	chr2:7154600-7184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr2:7154800-7161400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr2:7154800-7164800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr2:7155000-7164600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:7155000-7171400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:7155200-7161600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr2:7155200-7182000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr2:7155400-7162000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr2:7155400-7162600	Weak transcription	K562	blood
34	chr2:7155400-7162600	Weak transcription	NH-A	brain
35	chr2:7155600-7162800	Weak transcription	NHDF-Ad	bronchial
36	chr2:7155600-7163200	Weak transcription	Fetal Intestine Large	intestine
37	chr2:7155600-7178800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr2:7155800-7160800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:7155800-7160800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr2:7155800-7164400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr2:7156000-7161800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:7156000-7168800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr2:7156800-7160800	Enhancers	Ovary	ovary
44	chr2:7157000-7162000	Genic enhancers	Pancreas	Pancrea
45	chr2:7157000-7177600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr2:7157000-7179200	Weak transcription	Aorta	Aorta
47	chr2:7157200-7164400	Weak transcription	Colonic Mucosa	Colon
48	chr2:7157200-7169000	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr2:7157200-7185200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr2:7157400-7166000	Weak transcription	Rectal Smooth Muscle	rectum

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