Variant report

Variant	rs1023852
Chromosome Location	chr2:7162176-7162177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7056636..7059579-chr2:7161161..7163816,2	MCF-7	breast:
2	chr2:7126650..7129012-chr2:7161153..7163325,2	K562	blood:

Variant related genes	Relation type
ENSG00000151692	Chromatin interaction
ENSG00000228203	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1023850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.99[ASN][1000 genomes]
rs1023851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12468736	0.91[ASN][1000 genomes]
rs12476605	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12476611	0.91[ASN][1000 genomes]
rs12476778	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12477577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13034571	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16865853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16865867	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34060256	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34349013	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34719558	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35431985	0.91[ASN][1000 genomes]
rs3732330	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3755499	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3755503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3771962	0.83[CEU][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3771970	0.92[ASN][1000 genomes]
rs59522788	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62105654	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6707249	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6709878	0.95[JPT][hapmap]
rs6720046	0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs6722170	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs771254	1.00[CEU][hapmap]
rs771269	1.00[CEU][hapmap]
rs771270	1.00[CEU][hapmap]
rs921620	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs921621	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9917219	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs996508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7131000-7167600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr2:7131400-7162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:7142600-7163000	Weak transcription	Small Intestine	intestine
4	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:7148800-7171400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:7149200-7163800	Weak transcription	Gastric	stomach
7	chr2:7150600-7162400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:7151000-7164600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:7153000-7162200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:7154000-7183200	Strong transcription	Primary T cells from cord blood	blood
13	chr2:7154000-7190200	Strong transcription	Dnd41	blood
14	chr2:7154600-7163200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr2:7154600-7174800	Weak transcription	Primary B cells from cord blood	blood
16	chr2:7154600-7184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:7154800-7164800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:7155000-7164600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:7155000-7171400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:7155200-7182000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr2:7155400-7162600	Weak transcription	K562	blood
22	chr2:7155400-7162600	Weak transcription	NH-A	brain
23	chr2:7155600-7162800	Weak transcription	NHDF-Ad	bronchial
24	chr2:7155600-7163200	Weak transcription	Fetal Intestine Large	intestine
25	chr2:7155600-7178800	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr2:7155800-7164400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr2:7156000-7168800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:7157000-7177600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr2:7157000-7179200	Weak transcription	Aorta	Aorta
30	chr2:7157200-7164400	Weak transcription	Colonic Mucosa	Colon
31	chr2:7157200-7169000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr2:7157200-7185200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr2:7157400-7166000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr2:7157600-7165400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr2:7157800-7162400	Genic enhancers	Fetal Muscle Trunk	muscle
36	chr2:7158000-7166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:7158000-7168400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr2:7158200-7162200	Strong transcription	Fetal Intestine Small	intestine
39	chr2:7158200-7166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr2:7158200-7173200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr2:7158400-7164600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr2:7158400-7173000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr2:7158400-7186800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr2:7158600-7164400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr2:7158600-7164600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr2:7158600-7167000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr2:7158600-7173400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr2:7159000-7163200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr2:7159000-7181000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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