The 2.0 version of rSNPBase

Variant report

Variant rs3771964
Chromosome Location chr2:7158425-7158426
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:7131000-7167600 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr2:7131400-7162400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr2:7137400-7160200 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr2:7142600-7163000 Weak transcription Small Intestine intestine
5 chr2:7147200-7158600 Enhancers Colon Smooth Muscle Colon
6 chr2:7147400-7159200 Weak transcription Thymus Thymus
7 chr2:7148200-7159400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr2:7148200-7172600 Weak transcription H9 Cell Line embryonic stem cell
9 chr2:7148800-7159200 Enhancers Brain Substantia Nigra brain
10 chr2:7148800-7160200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr2:7148800-7160800 Enhancers Fetal Heart heart
12 chr2:7148800-7171400 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr2:7149200-7159200 Enhancers Brain Cingulate Gyrus brain
14 chr2:7149200-7159400 Weak transcription Placenta Placenta
15 chr2:7149200-7160000 Weak transcription Esophagus oesophagus
16 chr2:7149200-7160400 Weak transcription Lung lung
17 chr2:7149200-7163800 Weak transcription Gastric stomach
18 chr2:7150000-7159000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr2:7150600-7162400 Weak transcription Duodenum Mucosa Duodenum
20 chr2:7151000-7159800 Weak transcription Fetal Thymus thymus
21 chr2:7151000-7164600 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr2:7151200-7160200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr2:7151200-7185200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
24 chr2:7152600-7192400 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr2:7153000-7162200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr2:7153600-7159000 Enhancers Fetal Lung lung
27 chr2:7154000-7159000 Enhancers Fetal Brain Male brain
28 chr2:7154000-7183200 Strong transcription Primary T cells from cord blood blood
29 chr2:7154000-7190200 Strong transcription Dnd41 blood
30 chr2:7154200-7159200 Enhancers Adipose Nuclei Adipose
31 chr2:7154200-7160400 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr2:7154600-7158800 Enhancers Fetal Brain Female brain
33 chr2:7154600-7159000 Weak transcription Primary T helper naive cells from peripheral blood blood
34 chr2:7154600-7161000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr2:7154600-7163200 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr2:7154600-7174800 Weak transcription Primary B cells from cord blood blood
37 chr2:7154600-7184200 Weak transcription HUES48 Cell Line embryonic stem cell
38 chr2:7154800-7161400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
39 chr2:7154800-7164800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr2:7155000-7164600 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr2:7155000-7171400 Strong transcription Primary T helper cells fromperipheralblood blood
42 chr2:7155200-7161600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr2:7155200-7182000 Strong transcription Primary T helper naive cells fromperipheralblood blood
44 chr2:7155400-7162000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
45 chr2:7155400-7162600 Weak transcription K562 blood
46 chr2:7155400-7162600 Weak transcription NH-A brain
47 chr2:7155600-7162800 Weak transcription NHDF-Ad bronchial
48 chr2:7155600-7163200 Weak transcription Fetal Intestine Large intestine
49 chr2:7155600-7178800 Strong transcription Primary T helper cells PMA-I stimulated --
50 chr2:7155800-7160800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015