Variant report

Variant	rs12476605
Chromosome Location	chr2:7174192-7174193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:7062220..7062726-chr2:7174172..7174807,2	MCF-7	breast:
2	chr2:7036971..7037923-chr2:7174157..7175032,3	MCF-7	breast:
3	chr2:7172047..7174209-chr2:7188220..7189879,2	MCF-7	breast:
4	chr2:7173089..7176193-chr2:7177804..7181061,3	K562	blood:
5	chr2:7057247..7059808-chr2:7172924..7176553,3	MCF-7	breast:
6	chr2:7037267..7037767-chr2:7173908..7174830,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228203	Chromatin interaction
ENSG00000151692	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1023850	0.94[ASN][1000 genomes]
rs1023851	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1023852	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12468736	0.86[ASN][1000 genomes]
rs12476611	0.86[ASN][1000 genomes]
rs12476778	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477577	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13034571	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16865853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16865867	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2280337	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2280338	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34060256	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34349013	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34719558	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35431985	0.86[ASN][1000 genomes]
rs3732330	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755499	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755503	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3771955	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3771962	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3771964	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3771970	0.86[ASN][1000 genomes]
rs59522788	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62105654	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6707249	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6720046	0.86[ASN][1000 genomes]
rs6722170	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921620	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs921621	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9917219	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996508	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:7154000-7183200	Strong transcription	Primary T cells from cord blood	blood
4	chr2:7154000-7190200	Strong transcription	Dnd41	blood
5	chr2:7154600-7174800	Weak transcription	Primary B cells from cord blood	blood
6	chr2:7154600-7184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:7155200-7182000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr2:7155600-7178800	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr2:7157000-7177600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:7157000-7179200	Weak transcription	Aorta	Aorta
11	chr2:7157200-7185200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr2:7158400-7186800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:7159000-7181000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:7159400-7186800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:7159600-7180600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:7163200-7177400	Weak transcription	Fetal Brain Male	brain
18	chr2:7164000-7177600	Weak transcription	NHDF-Ad	bronchial
19	chr2:7164000-7178000	Weak transcription	K562	blood
20	chr2:7164600-7182200	Weak transcription	Small Intestine	intestine
21	chr2:7164800-7189000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr2:7165400-7179200	Weak transcription	Colonic Mucosa	Colon
23	chr2:7166800-7176400	Strong transcription	Brain Germinal Matrix	brain
24	chr2:7166800-7177800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:7167000-7177800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr2:7167400-7176600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr2:7167800-7175600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr2:7167800-7182800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr2:7168000-7180000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr2:7168000-7185400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr2:7168400-7174200	Strong transcription	Ovary	ovary
33	chr2:7168400-7177000	Strong transcription	Fetal Brain Female	brain
34	chr2:7168600-7175800	Genic enhancers	Spleen	Spleen
35	chr2:7168800-7176400	Strong transcription	Fetal Stomach	stomach
36	chr2:7169600-7184200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr2:7169800-7174200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr2:7169800-7174200	Strong transcription	Esophagus	oesophagus
39	chr2:7169800-7177200	Weak transcription	Right Atrium	heart
40	chr2:7170400-7177200	Strong transcription	Brain Hippocampus Middle	brain
41	chr2:7170800-7174200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr2:7170800-7187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr2:7171000-7174800	Genic enhancers	Fetal Muscle Trunk	muscle
44	chr2:7171200-7174800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr2:7171400-7174600	Strong transcription	Left Ventricle	heart
46	chr2:7171600-7179600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:7171800-7175600	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr2:7171800-7175800	Strong transcription	Brain Cingulate Gyrus	brain
49	chr2:7171800-7177800	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr2:7172000-7175400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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