Variant report

Variant	rs6707249
Chromosome Location	chr2:7187209-7187210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1023850	0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1023851	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1023852	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12476605	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12476778	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12477577	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13034571	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16865853	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16865867	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280337	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280338	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34060256	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34349013	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34719558	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3732330	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3755499	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3755503	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3771955	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3771962	0.81[CEU][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3771964	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3771970	0.81[ASN][1000 genomes]
rs59522788	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62105654	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6709878	0.90[JPT][hapmap]
rs6720046	0.82[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes]
rs6722170	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771254	1.00[CEU][hapmap]
rs771269	1.00[CEU][hapmap]
rs771270	1.00[CEU][hapmap]
rs921620	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs921621	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9917219	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs996508	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:7154000-7190200	Strong transcription	Dnd41	blood
3	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:7164800-7189000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:7170800-7187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:7172000-7191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:7172200-7197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr2:7173600-7189200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:7173800-7188600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr2:7174800-7195200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr2:7175400-7187600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:7175800-7187400	Weak transcription	Fetal Intestine Small	intestine
14	chr2:7178400-7197600	Weak transcription	Fetal Heart	heart
15	chr2:7180200-7188800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:7181000-7188600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr2:7181600-7188200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:7181800-7190400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:7182000-7189800	Weak transcription	Brain Germinal Matrix	brain
20	chr2:7182000-7191200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:7182000-7194000	Weak transcription	Ovary	ovary
22	chr2:7182000-7196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr2:7182000-7198000	Weak transcription	Right Ventricle	heart
24	chr2:7182200-7194600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr2:7182400-7194000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr2:7182600-7195000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr2:7182800-7187800	Weak transcription	Brain Angular Gyrus	brain
28	chr2:7182800-7188000	Weak transcription	Left Ventricle	heart
29	chr2:7182800-7188000	Weak transcription	HepG2	liver
30	chr2:7183000-7188200	Weak transcription	Lung	lung
31	chr2:7183000-7194000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr2:7184600-7194000	Weak transcription	Colon Smooth Muscle	Colon
33	chr2:7184800-7188000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:7184800-7189400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:7184800-7194200	Weak transcription	Fetal Brain Male	brain
36	chr2:7184800-7194800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr2:7185000-7188800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:7185200-7188400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr2:7185200-7189400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr2:7185400-7187800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr2:7185400-7193800	Weak transcription	Fetal Kidney	kidney
42	chr2:7185600-7188200	Enhancers	Thymus	Thymus
43	chr2:7185800-7188600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:7185800-7188800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr2:7185800-7188800	Enhancers	Fetal Thymus	thymus
46	chr2:7185800-7189200	Enhancers	Primary hematopoietic stem cells	blood
47	chr2:7186000-7187800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:7186000-7187800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr2:7186000-7188200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr2:7186000-7194000	Weak transcription	Fetal Brain Female	brain

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