Variant report

Variant	rs3772136
Chromosome Location	chr3:119176637-119176638
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119171366..119177327-chr3:119178101..119183743,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176142	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11712863	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11713200	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2049756	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2178318	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2282171	0.95[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3195852	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35078244	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3932422	0.88[EUR][1000 genomes]
rs4687859	0.96[CEU][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4688003	0.89[EUR][1000 genomes]
rs6438532	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6763561	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6797866	0.89[EUR][1000 genomes]
rs7613562	0.86[EUR][1000 genomes]
rs7629750	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9713715	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9833154	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9846088	0.95[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9851177	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9855347	0.89[EUR][1000 genomes]
rs9872589	0.90[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3772136	POGLUT1	cis	Artery Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119147000-119179000	Strong transcription	Osteobl	bone
2	chr3:119147200-119180400	Weak transcription	Stomach Mucosa	stomach
3	chr3:119147400-119179200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:119148800-119180400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:119149400-119179000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:119149400-119181000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:119149400-119181600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:119150200-119179000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:119150400-119180200	Strong transcription	Fetal Intestine Large	intestine
10	chr3:119150600-119180800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:119152000-119178000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:119152000-119179800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:119152200-119178800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:119152200-119179400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:119154000-119181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:119157000-119177000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:119158000-119180000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:119158800-119180000	Strong transcription	Adipose Nuclei	Adipose
19	chr3:119158800-119180000	Strong transcription	Dnd41	blood
20	chr3:119159800-119179400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:119159800-119180800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:119160400-119179400	Strong transcription	Duodenum Mucosa	Duodenum
23	chr3:119160400-119180200	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr3:119160600-119180000	Strong transcription	HUVEC	blood vessel
25	chr3:119160600-119180800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:119160800-119179400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:119161000-119179000	Strong transcription	Liver	Liver
28	chr3:119161000-119180800	Weak transcription	Fetal Brain Male	brain
29	chr3:119161200-119179600	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:119161800-119180000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:119161800-119180400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:119162600-119181000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:119162800-119179200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr3:119163200-119178200	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr3:119163200-119179800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr3:119163200-119180400	Strong transcription	HSMM	muscle
37	chr3:119163200-119180800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr3:119163200-119180800	Strong transcription	Placenta	Placenta
39	chr3:119163200-119181000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:119163400-119178600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr3:119163400-119180400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr3:119163400-119180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:119163400-119180800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:119163400-119180800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr3:119163400-119181200	Strong transcription	Fetal Thymus	thymus
46	chr3:119163600-119179000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:119163600-119180400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:119163600-119180600	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr3:119163800-119179800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr3:119163800-119180800	Strong transcription	Primary T cells fromperipheralblood	blood

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