Variant report

Variant	rs9833154
Chromosome Location	chr3:119251146-119251147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1131265	0.82[AFR][1000 genomes]
rs11712863	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11713200	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2293370	0.82[AFR][1000 genomes]
rs35078244	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3772136	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3932422	0.80[EUR][1000 genomes]
rs57271503	0.85[AFR][1000 genomes]
rs6438532	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6763561	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9843355	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119231800-119257200	Strong transcription	GM12878-XiMat	blood
2	chr3:119237800-119251400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:119237800-119255800	Weak transcription	Spleen	Spleen
4	chr3:119239600-119253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:119239800-119252400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr3:119243200-119251400	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:119244200-119253400	Weak transcription	Brain Substantia Nigra	brain
8	chr3:119244600-119253200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:119244800-119253400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:119244800-119257200	Weak transcription	Primary B cells from cord blood	blood
11	chr3:119245200-119276600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:119245400-119253400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:119249000-119254000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:119251000-119251200	Flanking Active TSS	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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