Variant report

Variant	rs3772227
Chromosome Location	chr3:156012072-156012073
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13093003	1.00[JPT][hapmap]
rs1710028	1.00[JPT][hapmap]
rs816547	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156008400-156012200	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr3:156008600-156012200	Active TSS	Brain Cingulate Gyrus	brain
3	chr3:156008600-156013400	Active TSS	Brain Anterior Caudate	brain
4	chr3:156009400-156012200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:156010000-156012200	Active TSS	Brain Hippocampus Middle	brain
6	chr3:156010000-156017000	Weak transcription	Right Atrium	heart
7	chr3:156010000-156024000	Weak transcription	Aorta	Aorta
8	chr3:156010000-156025400	Weak transcription	Pancreas	Pancrea
9	chr3:156010200-156012800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:156010200-156015400	Weak transcription	Fetal Brain Male	brain
11	chr3:156011800-156013000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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