Variant report

Variant	rs816547
Chromosome Location	chr3:156122299-156122300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13093003	1.00[JPT][hapmap]
rs1450110	1.00[LWK][hapmap]
rs1710028	1.00[JPT][hapmap]
rs3772227	1.00[JPT][hapmap]
rs3772248	1.00[CHB][hapmap]
rs3796167	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs816547	SLC33A1	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156121000-156123200	Enhancers	Brain Anterior Caudate	brain
3	chr3:156121600-156122800	Enhancers	Brain Hippocampus Middle	brain
4	chr3:156121800-156122800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:156122200-156122400	Active TSS	Brain Cingulate Gyrus	brain
6	chr3:156122200-156122600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:156122200-156122600	Flanking Active TSS	Brain Substantia Nigra	brain
8	chr3:156122200-156123200	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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