Variant report

Variant	rs3772529
Chromosome Location	chr3:105440354-105440355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105438428..105441312-chr3:105441392..105443154,2	K562	blood:
2	chr3:105435086..105438281-chr3:105439598..105442695,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877306	chr3:105372196-105495841	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv877307	chr3:105373836-105465189	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv591242	chr3:105373836-105470134	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877308	chr3:105373836-105495841	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877310	chr3:105409321-105495841	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv591243	chr3:105438320-105470134	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv591244	chr3:105438320-105495841	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv591245	chr3:105438806-105469882	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv591246	chr3:105439522-105504129	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105375800-105464600	Weak transcription	Small Intestine	intestine
2	chr3:105378000-105455400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:105379200-105440400	Weak transcription	Thymus	Thymus
4	chr3:105389200-105467200	Weak transcription	Stomach Mucosa	stomach
5	chr3:105407800-105457800	Weak transcription	HepG2	liver
6	chr3:105408400-105440400	Weak transcription	A549	lung
7	chr3:105409000-105441600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:105412400-105441600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:105417400-105443400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:105420800-105445600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:105421200-105441800	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:105421200-105465400	Weak transcription	Colonic Mucosa	Colon
13	chr3:105421400-105443000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:105422000-105441400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:105425400-105442400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:105429800-105441200	Strong transcription	Osteobl	bone
17	chr3:105432200-105441600	Strong transcription	Left Ventricle	heart
18	chr3:105432800-105463800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:105433600-105465600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:105433800-105445400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:105434400-105446600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:105434800-105463800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:105435000-105440400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:105435400-105440400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:105435400-105440600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:105438400-105441800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:105438800-105442000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:105438800-105442400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:105438800-105464000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr3:105438800-105465400	Weak transcription	Fetal Heart	heart
31	chr3:105439000-105441400	Weak transcription	Primary B cells from cord blood	blood
32	chr3:105439000-105441400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:105439000-105441600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr3:105439000-105441800	Weak transcription	Brain Angular Gyrus	brain
35	chr3:105439000-105441800	Weak transcription	Brain Anterior Caudate	brain
36	chr3:105439000-105442000	Weak transcription	Fetal Brain Female	brain
37	chr3:105439000-105442400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr3:105439000-105442800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:105439000-105445400	Weak transcription	Fetal Lung	lung
40	chr3:105439000-105446200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:105439000-105447200	Weak transcription	HSMM	muscle
42	chr3:105439000-105450600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:105439000-105457800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr3:105439000-105461600	Weak transcription	Dnd41	blood
45	chr3:105439000-105464000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:105439000-105464200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:105439000-105465400	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:105439000-105465800	Weak transcription	NHLF	lung
49	chr3:105439000-105466200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr3:105439000-105466600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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