Variant report

Variant	rs3772644
Chromosome Location	chr3:134878244-134878245
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1525015	1.00[CHB][hapmap]
rs16842460	1.00[CHB][hapmap]
rs4429672	1.00[CHB][hapmap]
rs6810117	1.00[CHB][hapmap]
rs7614716	1.00[CHB][hapmap]
rs7625747	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:134861600-134880600	Weak transcription	Fetal Brain Female	brain
3	chr3:134867800-134884800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:134868000-134878400	Weak transcription	Brain Anterior Caudate	brain
5	chr3:134868000-134878400	Weak transcription	Fetal Brain Male	brain
6	chr3:134868600-134878600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:134868600-134883800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:134869000-134878600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:134872800-134885000	Weak transcription	Brain Germinal Matrix	brain
10	chr3:134874400-134878600	Enhancers	Liver	Liver
11	chr3:134874800-134901800	Weak transcription	GM12878-XiMat	blood
12	chr3:134876600-134878400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:134877400-134878400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:134877400-134878400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:134877400-134879200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:134878200-134878800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr3:134878200-134879000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:134878200-134880800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:134878200-134887800	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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