Variant report

Variant	rs7614716
Chromosome Location	chr3:134846187-134846188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13316480	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1525015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16842308	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16842460	1.00[CHB][hapmap]
rs17765685	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs28718846	1.00[ASN][1000 genomes]
rs3772644	1.00[CHB][hapmap]
rs4429672	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs58193970	1.00[ASN][1000 genomes]
rs58195225	1.00[ASN][1000 genomes]
rs61413999	1.00[ASN][1000 genomes]
rs62270312	1.00[ASN][1000 genomes]
rs62270314	1.00[ASN][1000 genomes]
rs62270315	1.00[ASN][1000 genomes]
rs62270317	1.00[ASN][1000 genomes]
rs62270318	1.00[ASN][1000 genomes]
rs62270321	1.00[ASN][1000 genomes]
rs62270322	1.00[ASN][1000 genomes]
rs62273061	1.00[ASN][1000 genomes]
rs6764013	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6810117	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs73214171	1.00[ASN][1000 genomes]
rs73214194	1.00[ASN][1000 genomes]
rs73218216	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73218222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73218226	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218229	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7625747	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7626314	0.87[YRI][hapmap]
rs7635428	1.00[CHB][hapmap]
rs7636773	1.00[ASN][1000 genomes]
rs983401	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9848835	1.00[ASN][1000 genomes]
rs9849294	1.00[ASN][1000 genomes]
rs9859830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134834400-134846600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:134842000-134847000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:134842200-134853200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:134845400-134847400	Enhancers	Brain Germinal Matrix	brain
7	chr3:134845800-134847400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:134846000-134847600	Enhancers	Fetal Brain Male	brain

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