Variant report

Variant	rs62270318
Chromosome Location	chr3:134654799-134654800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13316480	1.00[ASN][1000 genomes]
rs16842308	1.00[ASN][1000 genomes]
rs28718846	1.00[ASN][1000 genomes]
rs4429672	1.00[ASN][1000 genomes]
rs58193970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58195225	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61413999	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270312	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270314	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270315	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270317	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270321	1.00[ASN][1000 genomes]
rs62270322	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62273061	1.00[ASN][1000 genomes]
rs66569551	0.98[EUR][1000 genomes]
rs6764013	1.00[ASN][1000 genomes]
rs73214171	1.00[ASN][1000 genomes]
rs73214194	1.00[ASN][1000 genomes]
rs73218226	1.00[ASN][1000 genomes]
rs7614716	1.00[ASN][1000 genomes]
rs7636773	1.00[ASN][1000 genomes]
rs983401	1.00[ASN][1000 genomes]
rs9848835	1.00[ASN][1000 genomes]
rs9849294	1.00[ASN][1000 genomes]
rs9859830	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134644200-134654800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:134644600-134656400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:134649000-134656200	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:134649000-134656200	Weak transcription	Fetal Stomach	stomach
5	chr3:134650400-134656000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:134650600-134655600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:134650600-134655600	Weak transcription	GM12878-XiMat	blood
8	chr3:134650600-134660600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:134651200-134655800	Weak transcription	Fetal Brain Male	brain
10	chr3:134653000-134656200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:134653200-134657600	Enhancers	Brain Anterior Caudate	brain
12	chr3:134653400-134655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:134653400-134655800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:134653400-134657200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:134653600-134655400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:134653800-134659000	Enhancers	Brain Germinal Matrix	brain
17	chr3:134654000-134655600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:134654000-134656200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:134654200-134657400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr3:134654400-134656400	Weak transcription	Right Atrium	heart
21	chr3:134654600-134658200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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