Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13316480	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16842308	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28718846	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4429672	1.00[ASN][1000 genomes]
rs58193970	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58195225	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270312	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270314	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270315	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270317	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270318	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270321	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62270322	1.00[ASN][1000 genomes]
rs62273061	1.00[ASN][1000 genomes]
rs66569551	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6764013	1.00[ASN][1000 genomes]
rs73214171	1.00[ASN][1000 genomes]
rs73214194	1.00[ASN][1000 genomes]
rs73218226	1.00[ASN][1000 genomes]
rs7614716	1.00[ASN][1000 genomes]
rs7636773	1.00[ASN][1000 genomes]
rs983401	1.00[ASN][1000 genomes]
rs9848835	1.00[ASN][1000 genomes]
rs9849294	1.00[ASN][1000 genomes]
rs9859830	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv10631	chr3:134647088-134648608	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134639000-134649400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:134639400-134653800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:134641600-134650400	Weak transcription	Fetal Brain Male	brain
4	chr3:134641800-134649800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:134642400-134653800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:134644200-134649600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:134644200-134654800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:134644600-134656400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:134644800-134649000	Enhancers	Fetal Muscle Leg	muscle
10	chr3:134645200-134649200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:134646400-134648600	Weak transcription	Fetal Stomach	stomach
12	chr3:134646600-134649600	Enhancers	Fetal Thymus	thymus
13	chr3:134647200-134648600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:134647200-134648800	Enhancers	GM12878-XiMat	blood
15	chr3:134647400-134648600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:134647800-134650400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:134648200-134648800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:134648400-134648600	Enhancers	Fetal Muscle Trunk	muscle

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