Variant report

Variant	rs9848835
Chromosome Location	chr3:134688402-134688403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13316480	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842308	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28718846	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58193970	1.00[ASN][1000 genomes]
rs58195225	1.00[ASN][1000 genomes]
rs61413999	1.00[ASN][1000 genomes]
rs61459786	0.80[EUR][1000 genomes]
rs62270312	1.00[ASN][1000 genomes]
rs62270314	1.00[ASN][1000 genomes]
rs62270315	1.00[ASN][1000 genomes]
rs62270317	1.00[ASN][1000 genomes]
rs62270318	1.00[ASN][1000 genomes]
rs62270321	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270322	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270343	0.99[EUR][1000 genomes]
rs62273061	1.00[ASN][1000 genomes]
rs66868541	0.84[EUR][1000 genomes]
rs6764013	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214171	1.00[ASN][1000 genomes]
rs73214194	1.00[ASN][1000 genomes]
rs73218226	1.00[ASN][1000 genomes]
rs7614716	1.00[ASN][1000 genomes]
rs7635428	0.99[EUR][1000 genomes]
rs7636773	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983401	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859830	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864852	0.84[EUR][1000 genomes]
rs9875045	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134671000-134693400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:134671000-134697400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134677400-134697400	Weak transcription	GM12878-XiMat	blood
4	chr3:134677800-134697000	Weak transcription	Psoas Muscle	Psoas
5	chr3:134678600-134699400	Weak transcription	Aorta	Aorta
6	chr3:134680200-134692800	Weak transcription	Spleen	Spleen
7	chr3:134683000-134690200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:134685200-134690200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:134685600-134690000	Weak transcription	Brain Anterior Caudate	brain
10	chr3:134685800-134689400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:134685800-134689400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:134685800-134689600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:134685800-134689800	Weak transcription	Fetal Brain Female	brain
14	chr3:134685800-134690000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:134685800-134690400	Weak transcription	Fetal Brain Male	brain
16	chr3:134685800-134691800	Weak transcription	Brain Cingulate Gyrus	brain

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