Variant report

Variant	rs28718846
Chromosome Location	chr3:134669146-134669147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134667860..134670173-chr3:134674253..134676895,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13316480	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842308	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429672	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58193970	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58195225	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61413999	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61459786	0.83[EUR][1000 genomes]
rs62270312	1.00[ASN][1000 genomes]
rs62270314	1.00[ASN][1000 genomes]
rs62270315	1.00[ASN][1000 genomes]
rs62270317	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62270318	1.00[ASN][1000 genomes]
rs62270321	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270322	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62270343	0.96[EUR][1000 genomes]
rs62273061	1.00[ASN][1000 genomes]
rs66569551	0.87[AFR][1000 genomes]
rs6764013	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214171	1.00[ASN][1000 genomes]
rs73214194	1.00[ASN][1000 genomes]
rs73218226	1.00[ASN][1000 genomes]
rs7614716	1.00[ASN][1000 genomes]
rs7635428	0.96[EUR][1000 genomes]
rs7636773	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983401	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848835	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849294	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859830	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875045	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134656600-134673000	Weak transcription	GM12878-XiMat	blood
2	chr3:134661200-134669200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:134662200-134669200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:134663800-134669800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:134665000-134676800	Weak transcription	Psoas Muscle	Psoas
6	chr3:134668000-134671000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr3:134668400-134669200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:134668400-134671400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:134669000-134671000	ZNF genes & repeats	Fetal Brain Female	brain

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