Variant report

Variant	rs61459786
Chromosome Location	chr3:134672870-134672871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134670207..134673023-chr3:134688821..134691750,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13316480	0.81[EUR][1000 genomes]
rs28718846	0.83[EUR][1000 genomes]
rs56287528	0.82[ASN][1000 genomes]
rs66868541	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73214117	0.82[ASN][1000 genomes]
rs73214121	0.82[ASN][1000 genomes]
rs73214124	0.82[ASN][1000 genomes]
rs73214125	0.82[ASN][1000 genomes]
rs73214126	0.82[ASN][1000 genomes]
rs73214150	0.83[ASN][1000 genomes]
rs7635428	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7636773	0.80[EUR][1000 genomes]
rs9848835	0.80[EUR][1000 genomes]
rs9864852	0.96[EUR][1000 genomes]
rs9875045	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv513075	chr3:134671776-134674683	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134656600-134673000	Weak transcription	GM12878-XiMat	blood
2	chr3:134665000-134676800	Weak transcription	Psoas Muscle	Psoas
3	chr3:134670600-134674200	Weak transcription	Brain Angular Gyrus	brain
4	chr3:134671000-134673200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:134671000-134674800	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:134671000-134674800	Weak transcription	Right Ventricle	heart
7	chr3:134671000-134675000	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:134671000-134676600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:134671000-134677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:134671000-134677600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:134671000-134679400	Weak transcription	Spleen	Spleen
12	chr3:134671000-134682800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:134671000-134684600	Weak transcription	Brain Germinal Matrix	brain
14	chr3:134671000-134693400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:134671000-134697400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:134671400-134684400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:134671600-134673200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:134672400-134676800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:134672400-134677000	Weak transcription	Brain Anterior Caudate	brain
20	chr3:134672800-134673200	Strong transcription	Fetal Brain Female	brain

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