Variant report

Variant	rs73214124
Chromosome Location	chr3:134677536-134677537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs36162	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36164	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs40436	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55676943	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55692122	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55865310	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55944861	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56040570	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56287528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61459786	0.82[ASN][1000 genomes]
rs67200399	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73214117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214126	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214150	1.00[EUR][1000 genomes]
rs73214152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73214159	0.80[ASN][1000 genomes]
rs73224343	0.93[EUR][1000 genomes]
rs73226272	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73226291	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73226295	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73226298	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73226302	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9864852	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134671000-134677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134671000-134677600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:134671000-134679400	Weak transcription	Spleen	Spleen
4	chr3:134671000-134682800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:134671000-134684600	Weak transcription	Brain Germinal Matrix	brain
6	chr3:134671000-134693400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:134671000-134697400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:134671400-134684400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:134673800-134684600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:134675200-134684600	Weak transcription	Fetal Brain Female	brain
11	chr3:134676800-134677800	Enhancers	Psoas Muscle	Psoas
12	chr3:134676800-134679800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:134677200-134677800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:134677200-134679600	Weak transcription	Brain Anterior Caudate	brain
15	chr3:134677400-134697400	Weak transcription	GM12878-XiMat	blood

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