Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs36162	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36164	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40436	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55676943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55692122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865310	0.93[EUR][1000 genomes]
rs55905990	0.83[ASN][1000 genomes]
rs55944861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56040570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287528	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67200399	0.93[EUR][1000 genomes]
rs73214117	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73214121	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73214124	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73214125	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73214126	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73214150	0.93[EUR][1000 genomes]
rs73214152	0.93[EUR][1000 genomes]
rs73224343	1.00[EUR][1000 genomes]
rs73226272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134650600-134660600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:134655000-134659400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:134656600-134673000	Weak transcription	GM12878-XiMat	blood
4	chr3:134657600-134659400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:134657800-134660800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:134658000-134659200	Enhancers	Brain Anterior Caudate	brain
7	chr3:134658000-134659600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr3:134658200-134659200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:134658200-134659600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:134658200-134669000	Weak transcription	Fetal Brain Female	brain
11	chr3:134658600-134659200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:134658600-134660600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:134659000-134659200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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