Variant report

Variant	rs55905990
Chromosome Location	chr3:134639955-134639956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs36162	0.83[ASN][1000 genomes]
rs36164	0.83[ASN][1000 genomes]
rs40436	0.83[ASN][1000 genomes]
rs4955517	0.83[EUR][1000 genomes]
rs55676943	0.83[ASN][1000 genomes]
rs55692122	0.83[ASN][1000 genomes]
rs55944861	0.83[ASN][1000 genomes]
rs56040570	0.83[ASN][1000 genomes]
rs73226272	0.83[ASN][1000 genomes]
rs73226291	0.83[ASN][1000 genomes]
rs73226295	0.83[ASN][1000 genomes]
rs73226298	0.83[ASN][1000 genomes]
rs73226302	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv460859	chr3:134626339-134645710	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134631800-134640000	Weak transcription	Fetal Brain Female	brain
2	chr3:134638600-134640800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134638800-134641800	Weak transcription	GM12878-XiMat	blood
4	chr3:134639000-134640800	Weak transcription	Fetal Brain Male	brain
5	chr3:134639000-134649400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:134639400-134653800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:134639800-134640000	Enhancers	Brain Germinal Matrix	brain
8	chr3:134639800-134640200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:134639800-134642600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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