Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134667860..134670173-chr3:134674253..134676895,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13316480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1525015	1.00[CHB][hapmap]
rs16842308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs16842460	1.00[CHB][hapmap]
rs28718846	0.96[EUR][1000 genomes]
rs4429672	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs61459786	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62270321	0.90[EUR][1000 genomes]
rs62270322	0.90[EUR][1000 genomes]
rs62270343	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66868541	0.83[EUR][1000 genomes]
rs6764013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs6810117	1.00[CHB][hapmap]
rs7614716	1.00[CHB][hapmap]
rs7625747	1.00[CHB][hapmap]
rs7636773	0.99[EUR][1000 genomes]
rs983401	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs9848835	0.99[EUR][1000 genomes]
rs9849294	0.97[EUR][1000 genomes]
rs9859830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs9864852	0.83[EUR][1000 genomes]
rs9875045	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2490314	chr3:134673390-134675383	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134665000-134676800	Weak transcription	Psoas Muscle	Psoas
2	chr3:134671000-134676600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:134671000-134677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:134671000-134677600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:134671000-134679400	Weak transcription	Spleen	Spleen
6	chr3:134671000-134682800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:134671000-134684600	Weak transcription	Brain Germinal Matrix	brain
8	chr3:134671000-134693400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:134671000-134697400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:134671400-134684400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:134672400-134676800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:134672400-134677000	Weak transcription	Brain Anterior Caudate	brain
13	chr3:134673800-134684600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:134674800-134675400	Enhancers	Left Ventricle	heart
15	chr3:134674800-134675400	Enhancers	Right Ventricle	heart
16	chr3:134675200-134675600	Flanking Active TSS	GM12878-XiMat	blood
17	chr3:134675200-134684600	Weak transcription	Fetal Brain Female	brain

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