Variant report

Variant	rs9875045
Chromosome Location	chr3:134686217-134686218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13316480	0.81[EUR][1000 genomes]
rs28718846	0.80[EUR][1000 genomes]
rs4429672	0.84[EUR][1000 genomes]
rs61459786	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62270343	0.84[EUR][1000 genomes]
rs66868541	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73214152	0.84[ASN][1000 genomes]
rs7635428	0.81[EUR][1000 genomes]
rs7636773	0.83[EUR][1000 genomes]
rs9848835	0.83[EUR][1000 genomes]
rs9849294	0.84[EUR][1000 genomes]
rs9864852	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134671000-134693400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:134671000-134697400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134677400-134697400	Weak transcription	GM12878-XiMat	blood
4	chr3:134677800-134697000	Weak transcription	Psoas Muscle	Psoas
5	chr3:134678600-134699400	Weak transcription	Aorta	Aorta
6	chr3:134680200-134692800	Weak transcription	Spleen	Spleen
7	chr3:134683000-134690200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:134685000-134686600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:134685200-134690200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:134685600-134690000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:134685800-134689400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:134685800-134689400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:134685800-134689600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:134685800-134689800	Weak transcription	Fetal Brain Female	brain
15	chr3:134685800-134690000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:134685800-134690400	Weak transcription	Fetal Brain Male	brain
17	chr3:134685800-134691800	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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