Variant report

Variant	rs3773207
Chromosome Location	chr3:78676116-78676117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10865569	0.94[ASW][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1507410	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1605434	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2249589	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2872005	0.80[JPT][hapmap]
rs3773195	0.80[JPT][hapmap]
rs3773202	0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3773206	0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3821596	0.83[CHD][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4681006	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6548591	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6548592	0.86[ASN][1000 genomes]
rs6807427	0.86[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7614084	0.83[CHD][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7625555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529995	chr3:78188643-78739698	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1008156	chr3:78444137-78765884	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1010650	chr3:78505564-78699161	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78638600-78676400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:78642400-78692600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:78646200-78683400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:78646800-78676400	Weak transcription	Lung	lung
5	chr3:78647200-78701000	Weak transcription	Spleen	Spleen
6	chr3:78647400-78694800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:78648600-78686800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:78649400-78681200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:78652600-78684200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:78653600-78676200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:78653800-78682400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:78654200-78682400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:78654200-78696800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:78654200-78708800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:78654200-78746600	Weak transcription	NHDF-Ad	bronchial
16	chr3:78654600-78697000	Weak transcription	Osteobl	bone
17	chr3:78654800-78706800	Weak transcription	NHLF	lung
18	chr3:78654800-78711000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:78655400-78679800	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:78655600-78678600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:78656000-78692800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:78656000-78718600	Weak transcription	Fetal Intestine Large	intestine
23	chr3:78656200-78676400	Weak transcription	Brain Anterior Caudate	brain
24	chr3:78656200-78678000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:78656200-78678800	Weak transcription	Fetal Kidney	kidney
26	chr3:78656200-78684400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:78656200-78687800	Weak transcription	Primary T cells from cord blood	blood
28	chr3:78656200-78690800	Weak transcription	HMEC	breast
29	chr3:78656200-78711000	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:78656800-78678800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr3:78659400-78704400	Weak transcription	Fetal Intestine Small	intestine
32	chr3:78659800-78676200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:78659800-78682400	Weak transcription	HSMMtube	muscle
34	chr3:78659800-78682400	Weak transcription	NHEK	skin
35	chr3:78660400-78676200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:78660400-78678000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:78660400-78696800	Weak transcription	HSMM	muscle
38	chr3:78662400-78679800	Weak transcription	Placenta	Placenta
39	chr3:78663000-78682400	Weak transcription	Brain Angular Gyrus	brain
40	chr3:78663400-78682800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr3:78663800-78677400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr3:78663800-78678200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:78664000-78676200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:78664000-78710200	Weak transcription	Brain Substantia Nigra	brain
45	chr3:78664200-78692400	Weak transcription	Fetal Brain Male	brain
46	chr3:78664400-78691600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr3:78665400-78680200	Weak transcription	Psoas Muscle	Psoas
48	chr3:78665400-78690400	Weak transcription	Right Ventricle	heart
49	chr3:78665800-78692600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr3:78666400-78678200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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