Variant report

Variant	rs3773786
Chromosome Location	chr3:159610911-159610912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159609810..159612666-chr3:159615841..159617422,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12630257	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33051	0.87[CHD][hapmap]
rs3773785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56008026	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73168583	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73168586	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877698	chr3:159583518-159640152	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv3584505	chr3:159606945-159648615	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159590800-159617600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:159596200-159613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:159599800-159620400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:159601200-159615200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:159601400-159611600	Weak transcription	Lung	lung
6	chr3:159601400-159613800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:159601400-159615200	Weak transcription	Ovary	ovary
8	chr3:159601400-159618600	Weak transcription	Fetal Brain Male	brain
9	chr3:159601400-159620400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:159601600-159620400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:159603000-159617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:159603400-159612600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:159603400-159616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:159603800-159615200	Weak transcription	Fetal Intestine Large	intestine
15	chr3:159605600-159612000	Enhancers	Brain Substantia Nigra	brain
16	chr3:159605800-159620400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:159607800-159612000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:159608400-159612000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:159608600-159612400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:159608800-159611200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:159608800-159616200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:159609000-159617000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:159609200-159611200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:159609400-159611000	Genic enhancers	Fetal Heart	heart
25	chr3:159609400-159611200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr3:159609400-159612400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:159609400-159614200	Strong transcription	NHEK	skin
28	chr3:159609400-159616400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:159609400-159616600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:159609600-159611000	Enhancers	Fetal Lung	lung
31	chr3:159609600-159612400	Genic enhancers	Brain Anterior Caudate	brain
32	chr3:159609600-159614800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:159609600-159616800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:159609800-159611200	Genic enhancers	Colon Smooth Muscle	Colon
35	chr3:159609800-159611800	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:159609800-159613200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:159609800-159613200	Genic enhancers	Brain Angular Gyrus	brain
38	chr3:159609800-159616000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:159609800-159617400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:159610000-159611000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:159610000-159613200	Genic enhancers	Brain Hippocampus Middle	brain
42	chr3:159610000-159613400	Strong transcription	Fetal Muscle Trunk	muscle
43	chr3:159610200-159611200	Genic enhancers	HSMMtube	muscle
44	chr3:159610200-159611400	Strong transcription	Placenta	Placenta
45	chr3:159610200-159611800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr3:159610200-159612200	Genic enhancers	Brain Cingulate Gyrus	brain
47	chr3:159610200-159612200	Strong transcription	Brain Germinal Matrix	brain
48	chr3:159610200-159612400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:159610200-159612600	Strong transcription	A549	lung
50	chr3:159610200-159614800	Strong transcription	HUVEC	blood vessel

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