Variant report

Variant	rs73168586
Chromosome Location	chr3:159600838-159600839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159546081..159548652-chr3:159599760..159602729,2	MCF-7	breast:
2	chr3:159599271..159600952-chr3:159602539..159604089,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12630257	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3773785	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3773786	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56008026	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73168583	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877698	chr3:159583518-159640152	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv997776	chr3:159585097-159668421	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159588200-159605200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:159590800-159617600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:159593400-159605400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:159594000-159606600	Weak transcription	Fetal Kidney	kidney
5	chr3:159596200-159613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:159597000-159601600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr3:159597000-159601600	Enhancers	NHDF-Ad	bronchial
8	chr3:159597000-159605800	Enhancers	Brain Angular Gyrus	brain
9	chr3:159597400-159601600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:159597600-159601400	Enhancers	Left Ventricle	heart
11	chr3:159597600-159601400	Enhancers	Psoas Muscle	Psoas
12	chr3:159598200-159602000	Enhancers	HMEC	breast
13	chr3:159598400-159601600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:159598600-159601800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:159598800-159602800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:159599000-159601600	Enhancers	HSMMtube	muscle
17	chr3:159599000-159601800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:159599200-159601000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr3:159599200-159601400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:159599200-159601400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:159599200-159601600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:159599200-159601800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:159599200-159601800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr3:159599200-159603200	Enhancers	HUVEC	blood vessel
25	chr3:159599400-159601400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:159599400-159601400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:159599400-159601400	Enhancers	Right Ventricle	heart
28	chr3:159599400-159601600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr3:159599400-159601600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr3:159599400-159602000	Enhancers	NHLF	lung
31	chr3:159599400-159603600	Enhancers	Colon Smooth Muscle	Colon
32	chr3:159599600-159601400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr3:159599600-159601400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:159599600-159601400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr3:159599600-159601400	Enhancers	Fetal Brain Male	brain
36	chr3:159599600-159601400	Enhancers	Lung	lung
37	chr3:159599600-159601400	Enhancers	Right Atrium	heart
38	chr3:159599600-159601600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:159599600-159601800	Enhancers	Fetal Muscle Leg	muscle
40	chr3:159599800-159601000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:159599800-159601000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:159599800-159601000	Enhancers	Placenta	Placenta
43	chr3:159599800-159601400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:159599800-159601600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:159599800-159609400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr3:159599800-159620400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr3:159600000-159601000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr3:159600000-159601000	Enhancers	Osteobl	bone
49	chr3:159600000-159610200	Weak transcription	Esophagus	oesophagus
50	chr3:159600000-159610200	Weak transcription	A549	lung

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