Variant report

Variant	rs3773889
Chromosome Location	chr3:154846771-154846772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10513468	1.00[JPT][hapmap]
rs10513470	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370031	1.00[JPT][hapmap]
rs1436635	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17384425	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17442808	1.00[JPT][hapmap]
rs3773884	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821719	0.85[EUR][1000 genomes]
rs4273335	1.00[JPT][hapmap]
rs4273336	1.00[JPT][hapmap]
rs6799300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv877677	chr3:154832222-154901205	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154824200-154884400	Weak transcription	Psoas Muscle	Psoas
2	chr3:154828200-154867400	Weak transcription	Fetal Lung	lung
3	chr3:154830800-154848200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:154833800-154869800	Weak transcription	Thymus	Thymus
5	chr3:154836400-154848200	Weak transcription	Primary B cells from cord blood	blood
6	chr3:154836400-154859800	Weak transcription	Adipose Nuclei	Adipose
7	chr3:154837200-154848200	Weak transcription	Small Intestine	intestine
8	chr3:154837200-154848800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:154837200-154852800	Weak transcription	Liver	Liver
10	chr3:154837200-154903200	Weak transcription	NHLF	lung
11	chr3:154843400-154847600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:154843400-154847600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:154843400-154899800	Strong transcription	Dnd41	blood
14	chr3:154843600-154847800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:154843600-154848200	Weak transcription	Placenta	Placenta
16	chr3:154843600-154849000	Strong transcription	NHDF-Ad	bronchial
17	chr3:154843800-154848800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:154844800-154848800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:154845600-154847000	Enhancers	Fetal Intestine Large	intestine
20	chr3:154845600-154856400	Weak transcription	HSMM	muscle
21	chr3:154846000-154846800	Enhancers	Fetal Intestine Small	intestine
22	chr3:154846000-154847400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:154846000-154848200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:154846200-154846800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:154846200-154856400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:154846600-154847200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:154846600-154847200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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