Variant report

Variant	rs17442808
Chromosome Location	chr3:154807877-154807878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:154806535..154808076-chr3:154809607..154811493,2	K562	blood:
2	chr3:154807022..154808766-chr3:154815072..154816797,2	MCF-7	breast:
3	chr3:154807454..154810340-chr3:154818810..154822797,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10513468	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10513470	1.00[JPT][hapmap]
rs1370031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17384425	1.00[JPT][hapmap]
rs3773884	1.00[JPT][hapmap]
rs3773889	1.00[JPT][hapmap]
rs4273335	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4273336	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56189742	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56208271	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62279988	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279989	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62279990	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6763852	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868930	chr3:154076125-154820242	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154798200-154808600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:154798200-154812600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:154798800-154818800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:154799000-154818600	Weak transcription	Placenta	Placenta
5	chr3:154799000-154818600	Weak transcription	HSMMtube	muscle
6	chr3:154799000-154819400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:154800000-154808600	Weak transcription	Brain Anterior Caudate	brain
8	chr3:154800000-154810600	Weak transcription	Fetal Thymus	thymus
9	chr3:154800000-154819400	Weak transcription	NHLF	lung
10	chr3:154800200-154811000	Weak transcription	Primary B cells from cord blood	blood
11	chr3:154800200-154824000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:154800400-154810600	Weak transcription	Thymus	Thymus
13	chr3:154800400-154812400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:154800400-154819000	Weak transcription	Adipose Nuclei	Adipose
15	chr3:154800400-154820400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:154800400-154826800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:154802000-154808600	Strong transcription	Liver	Liver
18	chr3:154802000-154808800	Strong transcription	HSMM	muscle
19	chr3:154802000-154810000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr3:154802200-154810400	Strong transcription	NHDF-Ad	bronchial
21	chr3:154803200-154810600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:154804200-154808800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:154804200-154813400	Weak transcription	Fetal Intestine Small	intestine
24	chr3:154805000-154808800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr3:154805000-154816600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:154805400-154810000	Genic enhancers	Dnd41	blood
27	chr3:154806200-154808800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:154806200-154813800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:154807200-154808000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:154807200-154808000	Strong transcription	Psoas Muscle	Psoas
31	chr3:154807200-154808200	Strong transcription	Fetal Intestine Large	intestine
32	chr3:154807200-154809000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:154807400-154808400	Strong transcription	Fetal Kidney	kidney
34	chr3:154807400-154808800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:154807600-154808600	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr3:154807600-154809800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:154807600-154823400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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