Variant report

Variant	rs56208271
Chromosome Location	chr3:154801832-154801833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1370031	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17442808	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62279988	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62279989	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62279990	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6763852	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868930	chr3:154076125-154820242	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv963491	chr3:154795648-154803797	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154796000-154802200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:154796600-154802000	Active TSS	Duodenum Mucosa	Duodenum
3	chr3:154798200-154808600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:154798200-154812600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:154798600-154803800	Weak transcription	Right Atrium	heart
6	chr3:154798800-154807200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:154798800-154818800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:154799000-154802400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:154799000-154805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:154799000-154818600	Weak transcription	Placenta	Placenta
11	chr3:154799000-154818600	Weak transcription	HSMMtube	muscle
12	chr3:154799000-154819400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:154799200-154803800	Weak transcription	Osteobl	bone
14	chr3:154799600-154802000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:154799800-154802800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:154800000-154808600	Weak transcription	Brain Anterior Caudate	brain
17	chr3:154800000-154810600	Weak transcription	Fetal Thymus	thymus
18	chr3:154800000-154819400	Weak transcription	NHLF	lung
19	chr3:154800200-154802400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:154800200-154802600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:154800200-154804400	Transcr. at gene 5' and 3'	Dnd41	blood
22	chr3:154800200-154807200	Weak transcription	Psoas Muscle	Psoas
23	chr3:154800200-154811000	Weak transcription	Primary B cells from cord blood	blood
24	chr3:154800200-154824000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:154800400-154805400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:154800400-154810600	Weak transcription	Thymus	Thymus
27	chr3:154800400-154812400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr3:154800400-154819000	Weak transcription	Adipose Nuclei	Adipose
29	chr3:154800400-154820400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:154800400-154826800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr3:154800800-154802000	Weak transcription	HSMM	muscle
32	chr3:154800800-154803400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:154801000-154802000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr3:154801200-154802000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:154801200-154802000	Weak transcription	Liver	Liver
36	chr3:154801200-154802000	Weak transcription	Fetal Kidney	kidney
37	chr3:154801200-154802400	Weak transcription	Fetal Intestine Small	intestine
38	chr3:154801200-154803800	Weak transcription	Fetal Intestine Large	intestine
39	chr3:154801400-154802000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr3:154801400-154802200	Genic enhancers	NHDF-Ad	bronchial
41	chr3:154801400-154803200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr3:154801400-154803200	Weak transcription	HMEC	breast
43	chr3:154801800-154802000	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr3:154801800-154802200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:154801800-154804000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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