Variant report

Variant	rs3774479
Chromosome Location	chr3:53653928-53653929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11919569	0.80[JPT][hapmap]
rs12486029	0.91[EUR][1000 genomes]
rs12493744	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2077167	0.87[CEU][hapmap]
rs3774474	0.81[JPT][hapmap]
rs3796345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821854	0.87[CEU][hapmap]
rs6762231	0.87[CEU][hapmap]
rs6775765	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6776071	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7610071	0.95[CHB][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53658400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53652800-53658400	Weak transcription	Lung	lung
3	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
4	chr3:53653200-53660400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:53653600-53654000	Strong transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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