Variant report

Variant	rs3796345
Chromosome Location	chr3:53653152-53653153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12486029	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12493744	0.92[CEU][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs2077167	0.88[CEU][hapmap]
rs3774479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821854	0.88[CEU][hapmap]
rs6762231	0.88[CEU][hapmap]
rs6775765	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6776071	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6794085	0.90[MEX][hapmap]
rs7610071	0.95[CHB][hapmap];0.81[CHD][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53650200-53653200	Strong transcription	Fetal Intestine Small	intestine
2	chr3:53650800-53653200	Enhancers	Colonic Mucosa	Colon
3	chr3:53650800-53653600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr3:53651200-53653600	Weak transcription	Fetal Intestine Large	intestine
5	chr3:53651200-53653600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr3:53651200-53653600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr3:53652800-53658400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:53652800-53658400	Weak transcription	Lung	lung
9	chr3:53652800-53684000	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links