Variant report

Variant	rs3774480
Chromosome Location	chr3:53654893-53654894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11915963	1.00[YRI][hapmap]
rs11926741	1.00[YRI][hapmap]
rs13065154	1.00[YRI][hapmap]
rs1380609	1.00[YRI][hapmap]
rs3774527	1.00[YRI][hapmap]
rs3821856	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs3821858	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53658400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53652800-53658400	Weak transcription	Lung	lung
3	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
4	chr3:53653200-53660400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:53654000-53657800	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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