Variant report

Variant	rs3774527
Chromosome Location	chr3:53705003-53705004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11915963	1.00[YRI][hapmap]
rs11926741	1.00[YRI][hapmap]
rs13065154	1.00[YRI][hapmap]
rs1380609	1.00[YRI][hapmap]
rs2232337	1.00[JPT][hapmap]
rs3774480	1.00[YRI][hapmap]
rs3821856	1.00[YRI][hapmap]
rs3821858	1.00[YRI][hapmap]
rs709318	1.00[ASW][hapmap]
rs807192	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53683200-53744200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:53689600-53707400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:53692000-53707600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:53696800-53706600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:53698000-53714000	Weak transcription	Brain Substantia Nigra	brain
6	chr3:53698800-53711200	Weak transcription	Spleen	Spleen
7	chr3:53700400-53708600	Weak transcription	Pancreas	Pancrea
8	chr3:53700600-53709800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:53701000-53705400	Weak transcription	Fetal Intestine Small	intestine
10	chr3:53701400-53705800	Weak transcription	Fetal Kidney	kidney
11	chr3:53701400-53706200	Weak transcription	Fetal Intestine Large	intestine
12	chr3:53703800-53705800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:53703800-53707000	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:53704600-53708600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:53705000-53710000	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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