Variant report

Variant	rs377484015
Chromosome Location	chr1:152748839-152748840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:152748838-152748888	HIPEpiC	eye:	n/a
2	chr1:152748838-152748888	BE2_C	brain:	n/a
3	chr1:152748838-152748888	HCPEpiC	choroid plexus:	n/a
4	chr1:152748838-152748888	Hepatocyte	liver:	n/a
5	chr1:152748838-152748888	GM12891	blood:	n/a
6	chr1:152748838-152748888	ECC-1	luminal epithelium:	n/a
7	chr1:152748838-152748888	AG04449	skin:	fetal
8	chr1:152748838-152748888	NH-A	brain:	n/a
9	chr1:152748838-152748888	PFSK-1	brain:	n/a
10	chr1:152748838-152748888	AG10803	skin:	n/a
11	chr1:152748838-152748888	PrEC	prostate:	n/a
12	chr1:152748838-152748888	HL-60	blood:	n/a
13	chr1:152748838-152748888	HPAEpiC	pulmonary alveolar:	n/a
14	chr1:152748838-152748888	SK-N-SH_RA	brain:	n/a
15	chr1:152748838-152748888	HEK293	kidney:	embryo
16	chr1:152748838-152748888	HUVEC	blood vessel:	n/a
17	chr1:152748838-152748888	HCM	heart:	n/a
18	chr1:152748838-152748888	GM12892	blood:	n/a
19	chr1:152748838-152748888	MCF10A-Er-Src	breast:	n/a
20	chr1:152748838-152748888	LNCaP	prostate:	n/a
21	chr1:152748838-152748888	HRE	kidney:	n/a
22	chr1:152748838-152748888	K562	blood:	n/a
23	chr1:152748838-152748888	AG09319	gingival:	n/a
24	chr1:152748838-152748888	NHBE	bronchial:	n/a
25	chr1:152748838-152748888	HEEpiC	esophagus:	n/a
26	chr1:152748838-152748888	Hela-S3	cervix:	n/a
27	chr1:152748838-152748888	NHDF-neo	bronchial:	n/a
28	chr1:152748838-152748888	SK-N-SH	brain:	n/a
29	chr1:152748838-152748888	RPTEC	kidney:	n/a
30	chr1:152748838-152748888	U87	brain:	n/a
31	chr1:152748838-152748888	AG04450	lung:	fetal
32	chr1:152748838-152748888	H1-hESC	embryonic stem cell:	embryo
33	chr1:152748838-152748888	SAEC	small airway:	n/a
34	chr1:152748838-152748888	SKMC	muscle:	n/a
35	chr1:152748838-152748888	HRCEpiC	kidney:	n/a
36	chr1:152748838-152748888	GM12878	blood:	n/a
37	chr1:152748838-152748888	CMK	blood:	n/a
38	chr1:152748838-152748888	ovcar-3	ovarian:	n/a
39	chr1:152748838-152748888	PANC-1	pancreas:	n/a
40	chr1:152748838-152748888	MCF-7	breast:	n/a
41	chr1:152748838-152748888	HCF	heart:	n/a
42	chr1:152748838-152748888	HAEpiC	amniotic membrane:	n/a
43	chr1:152748838-152748888	A549	lung:	n/a
44	chr1:152748838-152748888	HRPEpiC	eye:	n/a
45	chr1:152748838-152748888	T-47D	breast:	n/a
46	chr1:152748838-152748888	NT2-D1	testis:	n/a
47	chr1:152748838-152748888	NB4	blood:	n/a
48	chr1:152748838-152748888	BJ	skin:	n/a
49	chr1:152748838-152748888	HNPCEpiC	eye:	n/a
50	chr1:152748838-152748888	HepG2	liver:	n/a

No data

Variant related genes	Relation type
LCE1F	CpG island

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757755	chr1:152472839-152898153	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2758970	chr1:152472839-152898153	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv33483	chr1:152550269-152775526	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv547891	chr1:152556085-152770446	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv427786	chr1:152572990-152898153	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
7	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
8	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv428521	chr1:152663153-152831578	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv947325	chr1:152670204-152793272	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	esv34854	chr1:152671913-152756806	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
13	esv2763813	chr1:152687058-152780522	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv508615	chr1:152724155-152787503	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
15	nsv1004884	chr1:152724514-152780522	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
16	nsv1005867	chr1:152744949-152768688	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv1010895	chr1:152744949-152776743	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
18	nsv79	chr1:152746435-152773598	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv2910	chr1:152746435-152774414	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	nsv1014190	chr1:152747126-152778861	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152747800-152755400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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