Variant report

Variant	rs3775030
Chromosome Location	chr4:95869200-95869201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10516956	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11722010	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11934132	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11946254	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11946305	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12505093	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12505736	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12505819	0.82[EUR][1000 genomes]
rs12505823	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12508693	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12509564	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12513378	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13106009	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13118309	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13121253	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13143626	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13149539	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1373648	0.81[EUR][1000 genomes]
rs1373649	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1373651	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1444924	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1444925	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1444927	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1444928	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2120835	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35254904	0.81[ASN][1000 genomes]
rs3796410	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3796411	0.83[ASN][1000 genomes]
rs3796417	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3796418	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3796419	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3796422	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3796423	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3796425	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6532519	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6815064	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6823752	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7655484	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7658478	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7661049	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7673752	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7673943	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7698033	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7699472	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1014420	chr4:95853357-95886153	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv537189	chr4:95853357-95886153	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv997787	chr4:95859839-95934105	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv537190	chr4:95859839-95934105	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95867600-95870200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr4:95868600-95869200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:95868600-95869600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:95868600-95869600	Enhancers	A549	lung
5	chr4:95868800-95869800	Enhancers	HMEC	breast
6	chr4:95869000-95869200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:95869000-95869400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:95869000-95869800	Enhancers	NHEK	skin
9	chr4:95869200-95870000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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