Variant report

Variant	rs6815064
Chromosome Location	chr4:95895098-95895099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95894975..95897109-chr4:95919263..95921019,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10516956	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs11722010	0.81[EUR][1000 genomes]
rs11934132	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs11946305	0.81[EUR][1000 genomes]
rs12505093	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12505819	0.81[EUR][1000 genomes]
rs12505823	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12508693	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12509564	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13106009	0.85[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs13108056	0.88[JPT][hapmap]
rs13118309	0.85[CEU][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs13121253	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13142031	0.81[JPT][hapmap]
rs13143626	0.80[EUR][1000 genomes]
rs13149539	0.80[EUR][1000 genomes]
rs1373648	0.80[EUR][1000 genomes]
rs1373649	0.85[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs1373651	0.92[CEU][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs1444924	0.82[EUR][1000 genomes]
rs1444925	0.80[EUR][1000 genomes]
rs1444927	0.86[CEU][hapmap];0.94[JPT][hapmap]
rs1444928	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs1444929	0.81[JPT][hapmap]
rs2120835	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3775022	0.88[JPT][hapmap]
rs3775029	0.83[YRI][hapmap]
rs3775030	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3796410	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3796413	0.94[JPT][hapmap]
rs3796417	0.86[CEU][hapmap];0.89[JPT][hapmap]
rs3796419	0.85[CEU][hapmap];0.94[JPT][hapmap]
rs3796422	0.80[EUR][1000 genomes]
rs3796423	0.92[CEU][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs3796424	0.94[JPT][hapmap]
rs3796425	0.82[CEU][hapmap]
rs6532519	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6823752	0.81[EUR][1000 genomes]
rs7655484	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs7658478	0.94[JPT][hapmap]
rs7661049	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs7671870	0.94[JPT][hapmap]
rs7673752	0.85[CEU][hapmap];0.94[JPT][hapmap]
rs7673943	0.80[EUR][1000 genomes]
rs7698033	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs930581	0.94[JPT][hapmap]
rs9307150	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv997787	chr4:95859839-95934105	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv537190	chr4:95859839-95934105	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95882600-95895400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:95887400-95895600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:95893600-95895600	Enhancers	A549	lung
4	chr4:95894000-95896400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:95894200-95904800	Weak transcription	Aorta	Aorta
6	chr4:95895000-95896000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:95895000-95896200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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