Variant report

Variant	rs3775216
Chromosome Location	chr4:88019694-88019695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:87926786..87929415-chr4:88017959..88021125,3	MCF-7	breast:
2	chr4:87926587..87928662-chr4:88019407..88022060,2	K562	blood:
3	chr4:88014659..88016864-chr4:88019432..88023640,4	K562	blood:

Variant related genes	Relation type
ENSG00000172493	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2045592	0.89[YRI][hapmap]
rs3775220	0.89[YRI][hapmap]
rs4693156	0.89[YRI][hapmap]
rs6822432	1.00[MEX][hapmap]
rs6855627	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv879525	chr4:87964363-88033352	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87995200-88029200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:87995400-88037800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:87995800-88023800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:87996800-88023600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr4:88000400-88020800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:88001400-88025200	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:88001800-88025200	Weak transcription	Gastric	stomach
8	chr4:88003400-88028600	Weak transcription	HSMMtube	muscle
9	chr4:88004400-88025200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:88011800-88022400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:88011800-88032800	Weak transcription	Colonic Mucosa	Colon
12	chr4:88012000-88021400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:88014000-88021400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:88014400-88020600	Weak transcription	Pancreas	Pancrea
15	chr4:88014400-88020600	Weak transcription	Spleen	Spleen
16	chr4:88014400-88024600	Weak transcription	HSMM	muscle
17	chr4:88014600-88020200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr4:88014800-88020600	Weak transcription	Right Atrium	heart
19	chr4:88014800-88024400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:88014800-88024600	Weak transcription	Stomach Mucosa	stomach
21	chr4:88014800-88024800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr4:88015000-88021000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:88015000-88024000	Weak transcription	NHLF	lung
24	chr4:88015200-88023200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:88015200-88024200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:88015200-88024400	Strong transcription	GM12878-XiMat	blood
27	chr4:88015200-88024600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:88015200-88024600	Weak transcription	A549	lung
29	chr4:88015200-88025200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:88015200-88025200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:88015200-88028800	Weak transcription	Aorta	Aorta
32	chr4:88015200-88028800	Weak transcription	Fetal Heart	heart
33	chr4:88015200-88029200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr4:88015400-88021400	Weak transcription	Brain Angular Gyrus	brain
35	chr4:88015400-88022800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:88015400-88023800	Weak transcription	Osteobl	bone
37	chr4:88015400-88025200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:88015400-88025200	Weak transcription	Esophagus	oesophagus
39	chr4:88015400-88025200	Weak transcription	Left Ventricle	heart
40	chr4:88015400-88025200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr4:88015600-88023800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:88015600-88024000	Weak transcription	HUVEC	blood vessel
43	chr4:88015600-88026800	Weak transcription	Fetal Lung	lung
44	chr4:88015800-88020800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:88015800-88022800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:88015800-88023400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:88015800-88024800	Weak transcription	HMEC	breast
48	chr4:88015800-88035400	Weak transcription	Right Ventricle	heart
49	chr4:88016000-88024600	Weak transcription	Hela-S3	cervix
50	chr4:88016000-88026400	Weak transcription	Primary B cells from peripheral blood	blood

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